ModCRE DB

Transcription factor

B4DF53

cDNA FLJ53551, highly similar to Zinc finger protein 248

Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 233 aa

140 Generated PWM 1 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)1
MotifPredictionSourceDNA bindingSupportLogoActions
M00944_2.00 NN 70+% CisBP TCGCTATAA 70.5% identity Open · Scan
Nearest Neighbor (70% - 40%)139
MotifPredictionSourceDNA bindingSupportLogoActions
M08279_2.00 NN 70-40% CisBP CCTCCCTCC 68.8% identity Open · Scan
M00953_2.00 NN 70-40% CisBP ATCTATAT 68.2% identity Open · Scan
M00958_2.00 NN 70-40% CisBP CGGCATCCC 68.2% identity Open · Scan
M00960_2.00 NN 70-40% CisBP TGCATCCC 68.2% identity Open · Scan
M08263_2.00 NN 70-40% CisBP ATCTCGGCACTTTGGGAGGCCA 67.5% identity Open · Scan
M00950_2.00 NN 70-40% CisBP GCAGCCCA 67.0% identity Open · Scan
M00952_2.00 NN 70-40% CisBP GGATGCTC 67.0% identity Open · Scan
M07706_2.00 NN 70-40% CisBP GTCTTTGAGAGGGCCCAGATGTTGGACTTA 66.8% identity Open · Scan
M00939_2.00 NN 70-40% CisBP CCACCTCA 65.8% identity Open · Scan
M00943_2.00 NN 70-40% CisBP CCCGCTGC 65.8% identity Open · Scan
M00948_2.00 NN 70-40% CisBP GCAGCACC 65.8% identity Open · Scan
M00959_2.00 NN 70-40% CisBP GCCCTCCC 64.7% identity Open · Scan
MA1587.1 NN 70-40% JASPAR CCTCGACCTCCTGA 63.8% identity Open · Scan
M07646_2.00 NN 70-40% CisBP CTTTTTTTT 63.0% identity Open · Scan
M08245_2.00 NN 70-40% CisBP TGGTGCCTTATTCCC 62.5% identity Open · Scan
M00955_2.00 NN 70-40% CisBP ACGTCCTCT 62.3% identity Open · Scan
M08267_2.00 NN 70-40% CisBP CAGTTTCATTTTCC 62.2% identity Open · Scan
M04387_2.00 NN 70-40% CisBP CGTGCTCCCC 62.1% identity Open · Scan
M02924_2.00 NN 70-40% CisBP AGTGTTAACAGAACACCT 62.0% identity Open · Scan
M07700_2.00 NN 70-40% CisBP ATGTTGTGAGGAAGCCCA 62.0% identity Open · Scan
M07635_2.00 NN 70-40% CisBP AAGTTTTCTTGTATTATATCT 61.6% identity Open · Scan
M07610_2.00 NN 70-40% CisBP CCTTCTTCCTCCCCCCTGCCCACC 61.5% identity Open · Scan
M07689_2.00 NN 70-40% CisBP ACCCAGGCTCCTTCCATCTTGTGGCTC 61.3% identity Open · Scan
M08247_2.00 NN 70-40% CisBP AAAAATAACAAACGG 61.2% identity Open · Scan
MA1594.1 NN 70-40% JASPAR AGGGGACATCACTACAGATCCCAC 61.2% identity Open · Scan
M08375_2.00 NN 70-40% CisBP TTCCCCATTGGCTACTGCACCGGTCCT 61.1% identity Open · Scan
M07593_2.00 NN 70-40% CisBP AGATGAAGTCACCCCTCTTAC 60.8% identity Open · Scan
M08255_2.00 NN 70-40% CisBP CTCTTCCGGT 60.8% identity Open · Scan
M00782_2.00 NN 70-40% CisBP AGTGTGCGCTA 60.6% identity Open · Scan
M08355_2.00 NN 70-40% CisBP GCGAACTCCTATTCATCC 60.6% identity Open · Scan
M08252_2.00 NN 70-40% CisBP CCGGCTCCAGCACCC 60.1% identity Open · Scan
M04621_2.00 NN 70-40% CisBP AGCAATTCCGCTCA 59.8% identity Open · Scan
M08371_2.00 NN 70-40% CisBP CCAGACTTGTCCTCT 59.8% identity Open · Scan
MA1589.1 NN 70-40% JASPAR TAGGAGTGGAATTGCTGGGTC 59.8% identity Open · Scan
M07712_2.00 NN 70-40% CisBP ACATTTTTTTAATCTAAAAAAACATTTACA 59.5% identity Open · Scan
M08334_2.00 NN 70-40% CisBP TTTGTTTTTTTCTGATTGCTTTTTACTTAT 59.5% identity Open · Scan
M07678_2.00 NN 70-40% CisBP CCCGCCCCCTCCTCCCCCTTCCCACCC 59.4% identity Open · Scan
M08329_2.00 NN 70-40% CisBP GCTGCATAGTATTCC 59.4% identity Open · Scan
M08985_2.00 NN 70-40% CisBP TGAGGACCTACTGTGTGCC 59.4% identity Open · Scan
M07648_2.00 NN 70-40% CisBP GCTTGCAAAAAAAATTTAACTCCCAGCTC 59.3% identity Open · Scan
M08395_2.00 NN 70-40% CisBP GCTGCCTACTCTTCC 59.3% identity Open · Scan
M04598_2.00 NN 70-40% CisBP CGCTAACTCTCCACA 59.1% identity Open · Scan
M08365_2.00 NN 70-40% CisBP GCCAGCAGCCATCAG 59.1% identity Open · Scan
M08917_2.00 NN 70-40% CisBP GCTGAGCCATGTGGGGTGCT 58.7% identity Open · Scan
M08944_2.00 NN 70-40% CisBP TACCATGCTGTTTTGATTAC 58.7% identity Open · Scan
M07601_2.00 NN 70-40% CisBP CAGATGCCGGCACCATGCTTC 58.4% identity Open · Scan
M04650_2.00 NN 70-40% CisBP GCATAACTGCCCCGCTGCC 58.3% identity Open · Scan
M07581_2.00 NN 70-40% CisBP TCCCCTGTGCTTCTCTCCCCT 58.2% identity Open · Scan
M07658_2.00 NN 70-40% CisBP CCGCCGCAGCCGCCG 58.2% identity Open · Scan
M08274_2.00 NN 70-40% CisBP TTACTTGCAGCCCAACGCATTCCTAAC 58.0% identity Open · Scan
M07605_2.00 NN 70-40% CisBP TATTTTTTTTTATTTTTTTTTTTTTTTTTT 57.9% identity Open · Scan
M08309_2.00 NN 70-40% CisBP AAAAACCCCCCTGCAGAGCCCAGCCCT 57.8% identity Open · Scan
M08373_2.00 NN 70-40% CisBP CCCCCTGGCTCTTCCTCT 57.8% identity Open · Scan
M07762_2.00 NN 70-40% CisBP GCCGCGCACAGGCTTCTAGCC 57.6% identity Open · Scan
M07590_2.00 NN 70-40% CisBP TTTTTTTCTTTTATTTTTTTTTTTTTTTTTTTT 57.5% identity Open · Scan
M07686_2.00 NN 70-40% CisBP TAGCTTGTTTCCAGCCAC 57.5% identity Open · Scan
M08347_2.00 NN 70-40% CisBP GCCCTGGGCAGC 57.5% identity Open · Scan
M07620_2.00 NN 70-40% CisBP TTGGATCTGTGGATTCATGTCTTTCAT 57.3% identity Open · Scan
M08325_2.00 NN 70-40% CisBP TTTTTTTTT 57.3% identity Open · Scan
M07588_2.00 NN 70-40% CisBP TCCTTCCCTCTTTCC 57.1% identity Open · Scan
M07579_2.00 NN 70-40% CisBP CATCTCCAGGA 57.0% identity Open · Scan
M07607_2.00 NN 70-40% CisBP GGCTCCACG 57.0% identity Open · Scan
M07562_2.00 NN 70-40% CisBP GAAAAAAAC 56.8% identity Open · Scan
M08256_2.00 NN 70-40% CisBP GTGCCTT 56.7% identity Open · Scan
M08934_2.00 NN 70-40% CisBP GCTGTACCTGCTTATTAGGC 56.7% identity Open · Scan
M08311_2.00 NN 70-40% CisBP CTGGAACAGAAGGGGCGA 56.6% identity Open · Scan
M07578_2.00 NN 70-40% CisBP CAACTCTCC 56.4% identity Open · Scan
M08254_2.00 NN 70-40% CisBP CTGCCCTGGGACTTT 56.4% identity Open · Scan
M08914_2.00 NN 70-40% CisBP ATTTAGTCCATTTACATTTAATGT 56.3% identity Open · Scan
M04613_2.00 NN 70-40% CisBP CTCATGTGCTAATTACAAA 56.0% identity Open · Scan
M07746_2.00 NN 70-40% CisBP CAGCTGGCGCCCAACATGGGTCCC 56.0% identity Open · Scan
MA1124.1 NN 70-40% JASPAR CATTCATTCATTC 56.0% identity Open · Scan
MA1600.1 NN 70-40% JASPAR ATACAGTCCACCCCTTTA 55.9% identity Open · Scan
M07598_2.00 NN 70-40% CisBP CTGACAATACCAAGTGTTGAC 55.8% identity Open · Scan
M04465_2.00 NN 70-40% CisBP GTGATTCTTATCTTATCCTT 55.7% identity Open · Scan
M07699_2.00 NN 70-40% CisBP GGTTTAT 55.7% identity Open · Scan
M08935_2.00 NN 70-40% CisBP CCTCCTCCCTCAGACC 55.7% identity Open · Scan
M08291_2.00 NN 70-40% CisBP AATCCAGCCCTAGACTCTCCC 55.6% identity Open · Scan
MA0056.1 NN 70-40% JASPAR TGGGGA 55.6% identity Open · Scan
M07649_2.00 NN 70-40% CisBP CCCCCCCCCCCCTCAGGAATGCC 55.5% identity Open · Scan
M07667_2.00 NN 70-40% CisBP CCGCACAGGCCCCCGGGCCCC 55.3% identity Open · Scan
M07683_2.00 NN 70-40% CisBP GTGGGAAAGCCT 55.3% identity Open · Scan
M07707_2.00 NN 70-40% CisBP TCCCGC 55.3% identity Open · Scan
M07761_2.00 NN 70-40% CisBP CTGATTATTCACCCA 55.3% identity Open · Scan
M08392_2.00 NN 70-40% CisBP CTTCACCTGCTGAGG 55.3% identity Open · Scan
MA1601.1 NN 70-40% JASPAR ATGTGGGAAA 55.3% identity Open · Scan
M04590_2.00 NN 70-40% CisBP TGCGCTAACCATTGC 55.2% identity Open · Scan
M07582_2.00 NN 70-40% CisBP TCCCTG 55.2% identity Open · Scan
M07777_2.00 NN 70-40% CisBP GCCAATTTCCGTGGTGTAAAT 55.2% identity Open · Scan
M00142_2.00 NN 70-40% CisBP GTGCTCCT 55.1% identity Open · Scan
M04475_2.00 NN 70-40% CisBP GATGCACGTACCGTGCCTCA 55.1% identity Open · Scan
M07660_2.00 NN 70-40% CisBP CCGCGCCTACCTGAGGGCGCGGGCCTGGGG 55.1% identity Open · Scan
M08357_2.00 NN 70-40% CisBP GAGCCTGCTACTGAGCCTGGG 55.1% identity Open · Scan
M07587_2.00 NN 70-40% CisBP CCCCCTCCCCAGTCGAGCCCCCGC 55.0% identity Open · Scan
M08901_2.00 NN 70-40% CisBP CCAGTTCACACC 55.0% identity Open · Scan
M07645_2.00 NN 70-40% CisBP CTCCTT 54.8% identity Open · Scan
M00786_2.00 NN 70-40% CisBP TATATATAT 54.6% identity Open · Scan
M00945_2.00 NN 70-40% CisBP CACCGCAC 54.6% identity Open · Scan
M04536_2.00 NN 70-40% CisBP ACGTAACCCGATACC 54.6% identity Open · Scan
M05853_2.00 NN 70-40% CisBP CCACCTTTAGCCATATCT 54.6% identity Open · Scan
MA1656.1 NN 70-40% JASPAR CCAAGCCCAACCAG 54.4% identity Open · Scan
M07764_2.00 NN 70-40% CisBP CTGCACTCTCCCCTTCCCCCCCTCCCC 54.3% identity Open · Scan
M07650_2.00 NN 70-40% CisBP GGTCTATAAAAGGGGGGCCGCGGGGGGG 54.2% identity Open · Scan
M04505_2.00 NN 70-40% CisBP AGCTTTTCCCACAC 54.0% identity Open · Scan
M08342_2.00 NN 70-40% CisBP GCTCTGCCTCCCTCT 54.0% identity Open · Scan
M08399_2.00 NN 70-40% CisBP TACTCTGGGGCCACATGACTC 54.0% identity Open · Scan
M07770_2.00 NN 70-40% CisBP CTTGGACTT 53.8% identity Open · Scan
M07693_2.00 NN 70-40% CisBP CTCCTGTGTGTGCCTTGGCTG 53.7% identity Open · Scan
M07714_2.00 NN 70-40% CisBP AGCCCATTGGGGCCTATGCCC 53.4% identity Open · Scan
M08335_2.00 NN 70-40% CisBP AGTCGTTGTCTG 53.1% identity Open · Scan
M08283_2.00 NN 70-40% CisBP GACTTTTATTTT 52.8% identity Open · Scan
M08366_2.00 NN 70-40% CisBP GTTTGCTGCTTACAA 52.7% identity Open · Scan
M03671_2.00 NN 70-40% CisBP ATTACCATACAAGTGCAC 52.5% identity Open · Scan
M00134_2.00 NN 70-40% CisBP GCCACGCCCA 52.4% identity Open · Scan
M07703_2.00 NN 70-40% CisBP CCGACGG 52.0% identity Open · Scan
M08367_2.00 NN 70-40% CisBP GGGGTGATGACCACTCTGGCTTCTTAC 52.0% identity Open · Scan
M00641_2.00 NN 70-40% CisBP ATTGACCACT 51.9% identity Open · Scan
M07567_2.00 NN 70-40% CisBP CCACTCCACTCA 51.8% identity Open · Scan
M07729_2.00 NN 70-40% CisBP CCAGACTGCCTGCCAAAACCCCCT 51.8% identity Open · Scan
M08300_2.00 NN 70-40% CisBP CTGCCCAATTCAT 51.8% identity Open · Scan
M08386_2.00 NN 70-40% CisBP GCCTTAAAAGCTCAGCAC 51.8% identity Open · Scan
MA1592.1 NN 70-40% JASPAR GGTATGAGTTCTCGCT 51.8% identity Open · Scan
M01442_2.00 NN 70-40% CisBP ACCCCACATT 51.7% identity Open · Scan
M07753_2.00 NN 70-40% CisBP TGCATTCCTTGGCTTGTG 51.7% identity Open · Scan
M00609_2.00 NN 70-40% CisBP GGAAGCCCTA 51.3% identity Open · Scan
M07740_2.00 NN 70-40% CisBP TCCTGATTCCACACTCAAACATAACTTT 51.2% identity Open · Scan
M08320_2.00 NN 70-40% CisBP TTCCCTGCC 51.2% identity Open · Scan
M08908_2.00 NN 70-40% CisBP GCTGCTGCTTCTGCTG 51.2% identity Open · Scan
MA1602.1 NN 70-40% JASPAR CGTCTACACGGG 51.1% identity Open · Scan
M08860_2.00 NN 70-40% CisBP TCTTATAAGGGCACTAATCCCATT 51.0% identity Open · Scan
M07623_2.00 NN 70-40% CisBP GTCTAATAGAGCTGGGCTGCA 50.7% identity Open · Scan
MA0528.1 NN 70-40% JASPAR GGAGGAGGAGGGGGAGGAGGA 50.4% identity Open · Scan
M07631_2.00 NN 70-40% CisBP AATTTCAAAAATGCTATGGGC 50.2% identity Open · Scan
M07717_2.00 NN 70-40% CisBP GGCTCCGCCCCC 50.2% identity Open · Scan
M04611_2.00 NN 70-40% CisBP CTTTCGGACAC 50.0% identity Open · Scan
M05859_2.00 NN 70-40% CisBP GGCCACGCCCACT 50.0% identity Open · Scan
M07600_2.00 NN 70-40% CisBP GCATTAGC 50.0% identity Open · Scan
M07679_2.00 NN 70-40% CisBP TGCGATCTC 50.0% identity Open · Scan
MA0685.1 NN 70-40% JASPAR TAAGCCACGCCCCCTTT 50.0% identity Open · Scan
ModCRE0

No generated PWM in this category.

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 233 aa
43-196

Region 43-196 0 PWM

Residues
154 aa
Domains
PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type
3D models
1 active PDB
Templates
2I13
Sources
Structure model
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
1 active PDB model
Region 43-1961 model
Actions
Predicted = Low TFS_B4DF53:43:196_2i13_A_1 2i13 43-196 View model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
34-56PF00096Zinc finger, C2H2 typeoverlaps 43-196
62-84PF00096Zinc finger, C2H2 typeoverlaps 43-196
90-112PF00096Zinc finger, C2H2 typeoverlaps 43-196
118-140PF00096Zinc finger, C2H2 typeoverlaps 43-196
146-168PF00096Zinc finger, C2H2 typeoverlaps 43-196
174-196PF00096Zinc finger, C2H2 typeoverlaps 43-196
202-224PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions