ModCRE DB

Transcription factor

B4DF82

Zinc finger protein 248

Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 313 aa

98 Generated PWM 1 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)1
MotifPredictionSourceDNA bindingSupportLogoActions
M00944_2.00 NN 70+% CisBP TCGCTATAA 70.5% identity Open · Scan
Nearest Neighbor (70% - 40%)97
MotifPredictionSourceDNA bindingSupportLogoActions
M00953_2.00 NN 70-40% CisBP ATCTATAT 68.2% identity Open · Scan
M00958_2.00 NN 70-40% CisBP CGGCATCCC 68.2% identity Open · Scan
M00960_2.00 NN 70-40% CisBP TGCATCCC 68.2% identity Open · Scan
M00950_2.00 NN 70-40% CisBP GCAGCCCA 67.0% identity Open · Scan
M00952_2.00 NN 70-40% CisBP GGATGCTC 67.0% identity Open · Scan
M00939_2.00 NN 70-40% CisBP CCACCTCA 65.8% identity Open · Scan
M00943_2.00 NN 70-40% CisBP CCCGCTGC 65.8% identity Open · Scan
M00948_2.00 NN 70-40% CisBP GCAGCACC 65.8% identity Open · Scan
M00959_2.00 NN 70-40% CisBP GCCCTCCC 64.7% identity Open · Scan
M00955_2.00 NN 70-40% CisBP ACGTCCTCT 62.3% identity Open · Scan
M04387_2.00 NN 70-40% CisBP CGTGCTCCCC 62.1% identity Open · Scan
M02924_2.00 NN 70-40% CisBP AGTGTTAACAGAACACCT 62.0% identity Open · Scan
M07593_2.00 NN 70-40% CisBP AGATGAAGTCACCCCTCTTAC 60.1% identity Open · Scan
M07635_2.00 NN 70-40% CisBP AAGTTTTCTTGTATTATATCT 59.9% identity Open · Scan
M08985_2.00 NN 70-40% CisBP TGAGGACCTACTGTGTGCC 59.8% identity Open · Scan
M04598_2.00 NN 70-40% CisBP CGCTAACTCTCCACA 59.1% identity Open · Scan
M08279_2.00 NN 70-40% CisBP CCTCCCTCC 59.0% identity Open · Scan
M07678_2.00 NN 70-40% CisBP CCCGCCCCCTCCTCCCCCTTCCCACCC 58.7% identity Open · Scan
M08263_2.00 NN 70-40% CisBP ATCTCGGCACTTTGGGAGGCCA 58.6% identity Open · Scan
M08365_2.00 NN 70-40% CisBP GCCAGCAGCCATCAG 58.2% identity Open · Scan
M08917_2.00 NN 70-40% CisBP GCTGAGCCATGTGGGGTGCT 58.0% identity Open · Scan
M07706_2.00 NN 70-40% CisBP GTCTTTGAGAGGGCCCAGATGTTGGACTTA 57.5% identity Open · Scan
M08325_2.00 NN 70-40% CisBP TTTTTTTTT 57.3% identity Open · Scan
M07620_2.00 NN 70-40% CisBP TTGGATCTGTGGATTCATGTCTTTCAT 56.9% identity Open · Scan
M07562_2.00 NN 70-40% CisBP GAAAAAAAC 56.8% identity Open · Scan
M07578_2.00 NN 70-40% CisBP CAACTCTCC 56.8% identity Open · Scan
M08254_2.00 NN 70-40% CisBP CTGCCCTGGGACTTT 56.4% identity Open · Scan
M08935_2.00 NN 70-40% CisBP CCTCCTCCCTCAGACC 56.1% identity Open · Scan
MA1124.1 NN 70-40% JASPAR CATTCATTCATTC 56.0% identity Open · Scan
M04650_2.00 NN 70-40% CisBP GCATAACTGCCCCGCTGCC 55.9% identity Open · Scan
M07607_2.00 NN 70-40% CisBP GGCTCCACG 55.9% identity Open · Scan
M04465_2.00 NN 70-40% CisBP GTGATTCTTATCTTATCCTT 55.7% identity Open · Scan
M07683_2.00 NN 70-40% CisBP GTGGGAAAGCCT 55.3% identity Open · Scan
MA1601.1 NN 70-40% JASPAR ATGTGGGAAA 55.3% identity Open · Scan
M00142_2.00 NN 70-40% CisBP GTGCTCCT 55.1% identity Open · Scan
M04475_2.00 NN 70-40% CisBP GATGCACGTACCGTGCCTCA 55.1% identity Open · Scan
M08392_2.00 NN 70-40% CisBP CTTCACCTGCTGAGG 55.0% identity Open · Scan
M08901_2.00 NN 70-40% CisBP CCAGTTCACACC 55.0% identity Open · Scan
MA1587.1 NN 70-40% JASPAR CCTCGACCTCCTGA 54.9% identity Open · Scan
M00786_2.00 NN 70-40% CisBP TATATATAT 54.6% identity Open · Scan
M00945_2.00 NN 70-40% CisBP CACCGCAC 54.6% identity Open · Scan
M04515_2.00 NN 70-40% CisBP TATGCTATAACAAGCAGCCCC 54.6% identity Open · Scan
M04536_2.00 NN 70-40% CisBP ACGTAACCCGATACC 54.6% identity Open · Scan
MA1600.1 NN 70-40% JASPAR ATACAGTCCACCCCTTTA 54.5% identity Open · Scan
MA1656.1 NN 70-40% JASPAR CCAAGCCCAACCAG 54.4% identity Open · Scan
M07689_2.00 NN 70-40% CisBP ACCCAGGCTCCTTCCATCTTGTGGCTC 54.2% identity Open · Scan
M08375_2.00 NN 70-40% CisBP TTCCCCATTGGCTACTGCACCGGTCCT 54.2% identity Open · Scan
M04505_2.00 NN 70-40% CisBP AGCTTTTCCCACAC 54.0% identity Open · Scan
M08245_2.00 NN 70-40% CisBP TGGTGCCTTATTCCC 53.9% identity Open · Scan
M08247_2.00 NN 70-40% CisBP AAAAATAACAAACGG 53.6% identity Open · Scan
MA1594.1 NN 70-40% JASPAR AGGGGACATCACTACAGATCCCAC 53.6% identity Open · Scan
M04613_2.00 NN 70-40% CisBP CTCATGTGCTAATTACAAA 53.4% identity Open · Scan
M08267_2.00 NN 70-40% CisBP CAGTTTCATTTTCC 53.3% identity Open · Scan
M07581_2.00 NN 70-40% CisBP TCCCCTGTGCTTCTCTCCCCT 53.2% identity Open · Scan
M07610_2.00 NN 70-40% CisBP CCTTCTTCCTCCCCCCTGCCCACC 53.2% identity Open · Scan
M08283_2.00 NN 70-40% CisBP GACTTTTATTTT 52.8% identity Open · Scan
M00782_2.00 NN 70-40% CisBP AGTGTGCGCTA 52.7% identity Open · Scan
M07712_2.00 NN 70-40% CisBP ACATTTTTTTAATCTAAAAAAACATTTACA 52.7% identity Open · Scan
M03671_2.00 NN 70-40% CisBP ATTACCATACAAGTGCAC 52.5% identity Open · Scan
M00134_2.00 NN 70-40% CisBP GCCACGCCCA 52.4% identity Open · Scan
M07590_2.00 NN 70-40% CisBP TTTTTTTCTTTTATTTTTTTTTTTTTTTTTTTT 52.2% identity Open · Scan
M07646_2.00 NN 70-40% CisBP CTTTTTTTT 52.2% identity Open · Scan
M08255_2.00 NN 70-40% CisBP CTCTTCCGGT 52.0% identity Open · Scan
M00641_2.00 NN 70-40% CisBP ATTGACCACT 51.9% identity Open · Scan
M07725_2.00 NN 70-40% CisBP AAGCACTGTACT 51.9% identity Open · Scan
M08944_2.00 NN 70-40% CisBP TACCATGCTGTTTTGATTAC 51.9% identity Open · Scan
MA1592.1 NN 70-40% JASPAR GGTATGAGTTCTCGCT 51.8% identity Open · Scan
M01442_2.00 NN 70-40% CisBP ACCCCACATT 51.7% identity Open · Scan
M04590_2.00 NN 70-40% CisBP TGCGCTAACCATTGC 51.6% identity Open · Scan
M08357_2.00 NN 70-40% CisBP GAGCCTGCTACTGAGCCTGGG 51.4% identity Open · Scan
M00609_2.00 NN 70-40% CisBP GGAAGCCCTA 51.3% identity Open · Scan
M07600_2.00 NN 70-40% CisBP GCATTAGC 51.3% identity Open · Scan
M07700_2.00 NN 70-40% CisBP ATGTTGTGAGGAAGCCCA 51.3% identity Open · Scan
M08371_2.00 NN 70-40% CisBP CCAGACTTGTCCTCT 51.3% identity Open · Scan
M08395_2.00 NN 70-40% CisBP GCTGCCTACTCTTCC 51.3% identity Open · Scan
M07649_2.00 NN 70-40% CisBP CCCCCCCCCCCCTCAGGAATGCC 51.2% identity Open · Scan
M08320_2.00 NN 70-40% CisBP TTCCCTGCC 51.2% identity Open · Scan
M08908_2.00 NN 70-40% CisBP GCTGCTGCTTCTGCTG 51.2% identity Open · Scan
MA1602.1 NN 70-40% JASPAR CGTCTACACGGG 51.1% identity Open · Scan
M07566_2.00 NN 70-40% CisBP TCAAACCATCCTTGC 51.0% identity Open · Scan
M07660_2.00 NN 70-40% CisBP CCGCGCCTACCTGAGGGCGCGGGCCTGGGG 50.9% identity Open · Scan
M07746_2.00 NN 70-40% CisBP CAGCTGGCGCCCAACATGGGTCCC 50.9% identity Open · Scan
M08252_2.00 NN 70-40% CisBP CCGGCTCCAGCACCC 50.8% identity Open · Scan
M08334_2.00 NN 70-40% CisBP TTTGTTTTTTTCTGATTGCTTTTTACTTAT 50.8% identity Open · Scan
M07623_2.00 NN 70-40% CisBP GTCTAATAGAGCTGGGCTGCA 50.7% identity Open · Scan
M07579_2.00 NN 70-40% CisBP CATCTCCAGGA 50.6% identity Open · Scan
M07601_2.00 NN 70-40% CisBP CAGATGCCGGCACCATGCTTC 50.6% identity Open · Scan
M08347_2.00 NN 70-40% CisBP GCCCTGGGCAGC 50.6% identity Open · Scan
M08256_2.00 NN 70-40% CisBP GTGCCTT 50.5% identity Open · Scan
M08355_2.00 NN 70-40% CisBP GCGAACTCCTATTCATCC 50.4% identity Open · Scan
M07605_2.00 NN 70-40% CisBP TATTTTTTTTTATTTTTTTTTTTTTTTTTT 50.3% identity Open · Scan
M08291_2.00 NN 70-40% CisBP AATCCAGCCCTAGACTCTCCC 50.3% identity Open · Scan
M07648_2.00 NN 70-40% CisBP GCTTGCAAAAAAAATTTAACTCCCAGCTC 50.1% identity Open · Scan
M04611_2.00 NN 70-40% CisBP CTTTCGGACAC 50.0% identity Open · Scan
M05859_2.00 NN 70-40% CisBP GGCCACGCCCACT 50.0% identity Open · Scan
M08934_2.00 NN 70-40% CisBP GCTGTACCTGCTTATTAGGC 50.0% identity Open · Scan
MA0685.1 NN 70-40% JASPAR TAAGCCACGCCCCCTTT 50.0% identity Open · Scan
ModCRE0

No generated PWM in this category.

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 313 aa
123-276

Region 123-276 0 PWM

Residues
154 aa
Domains
PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type
3D models
1 active PDB
Templates
2I13
Sources
Structure model
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
1 active PDB model
Region 123-2761 model
Actions
Predicted = Low TFS_B4DF82:123:276_2i13_A_1 2i13 123-276 View model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
114-136PF00096Zinc finger, C2H2 typeoverlaps 123-276
142-164PF00096Zinc finger, C2H2 typeoverlaps 123-276
170-192PF00096Zinc finger, C2H2 typeoverlaps 123-276
198-220PF00096Zinc finger, C2H2 typeoverlaps 123-276
226-248PF00096Zinc finger, C2H2 typeoverlaps 123-276
254-276PF00096Zinc finger, C2H2 typeoverlaps 123-276
282-304PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions