ModCRE DB

Transcription factor

B4DFD9

cDNA FLJ55746, moderately similar to Sal-like protein 2

Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 768 aa

23 Generated PWM 11 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)13
MotifPredictionSourceDNA bindingSupportLogoActions
M00641_2.00 NN 70-40% CisBP ATTGACCACT 60.0% identity Open · Scan
M00953_2.00 NN 70-40% CisBP ATCTATAT 54.7% identity Open · Scan
M07667_2.00 NN 70-40% CisBP CCGCACAGGCCCCCGGGCCCC 54.7% identity Open · Scan
M01022_2.00 NN 70-40% CisBP GGACCACCCAC 53.8% identity Open · Scan
M08252_2.00 NN 70-40% CisBP CCGGCTCCAGCACCC 52.8% identity Open · Scan
M00608_2.00 NN 70-40% CisBP CCTGTTG 51.0% identity Open · Scan
M03691_2.00 NN 70-40% CisBP ATGCAACAGGTGG 50.9% identity Open · Scan
M06087_2.00 NN 70-40% CisBP ACCACCTGTTGCA 50.9% identity Open · Scan
M10203_2.00 NN 70-40% CisBP CCCCAAACCACCCC 50.8% identity Open · Scan
MA0073.1 NN 70-40% JASPAR CCCCAAACCACCCCCCCCCA 50.8% identity Open · Scan
M08397_2.00 NN 70-40% CisBP ATGCAACAGGTG 50.0% identity Open · Scan
MA0743.1 NN 70-40% JASPAR GAGCAACAGGTGGTT 50.0% identity Open · Scan
MA0744.1 NN 70-40% JASPAR ATGCAACAGGTGG 50.0% identity Open · Scan
ModCRE10
MotifPredictionSourceDNA bindingSupportLogoActions
TFS_tr_B4DFD9_B4DFD9_HUMAN:370:421_8a4i_I_1 ModCRE Homology model CGCCCCGACCT Region 370-421 · 1 3D model Open · Scan
TFS_tr_B4DFD9_B4DFD9_HUMAN:370:421_8cuc_F_1 ModCRE Homology model AAATCCCCCCCC Region 370-421 · 1 3D model Open · Scan
TFS_tr_B4DFD9_B4DFD9_HUMAN:371:421_5yj3_C_1 ModCRE Homology model GACCG Region 371-421 · 1 3D model Open · Scan
TFS_tr_B4DFD9_B4DFD9_HUMAN:371:421_6e93_A_1 ModCRE Homology model AAACGTCGCAGCC Region 371-421 · 1 3D model Open · Scan
TFS_tr_B4DFD9_B4DFD9_HUMAN:371:421_6e94_A_1 ModCRE Homology model AATCGCGGCAGCC Region 371-421 · 1 3D model Open · Scan
TFS_tr_B4DFD9_B4DFD9_HUMAN:372:421_3uk3_C_1 ModCRE Homology model TCTGGGAATGT Region 372-421 · 1 3D model Open · Scan
TFS_tr_B4DFD9_B4DFD9_HUMAN:372:421_4is1_C_1 ModCRE Homology model AACCTGAATGT Region 372-421 · 1 3D model Open · Scan
TFS_tr_B4DFD9_B4DFD9_HUMAN:372:423_3uk3_D_1 ModCRE Homology model TGTGTCCACC Region 372-423 · 1 3D model Open · Scan
TFS_tr_B4DFD9_B4DFD9_HUMAN:372:423_4is1_D_1 ModCRE Homology model TGTGTCCTCC Region 372-423 · 1 3D model Open · Scan
TFS_tr_B4DFD9_B4DFD9_HUMAN:372:428_8e3e_A_1 ModCRE Homology model GGACGGGCACCTTAA Region 372-428 · 1 3D model Open · Scan

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 768 aa
370-428

Region 370-428 10 PWM

Residues
59 aa
Domains
PF00096 · Zinc finger, C2H2 type
3D models
11 active PDBs · 6 summary rows
Templates
1LLM, 3UK3, 4IS1, 5YJ3, 6E93, 6E94, 8A4I, 8CUC, ...
Sources
Predicted = Low
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
11 active PDB models 6 summary rows
Region 370-42811 models · 6 summary rows
Actions
Predicted = Low DIMER_tr_B4DFD9_B4DFD9_HUMAN:372:417_1llm_D_1 1llm 372-417 View model · PDB
Predicted = Low TFS_tr_B4DFD9_B4DFD9_HUMAN:370:421_8a4i_I_1 8a4i 370-421 View model · PDB
Predicted = Low TFS_tr_B4DFD9_B4DFD9_HUMAN:370:421_8cuc_F_1 8cuc 370-421 View model · PDB
Predicted = Low TFS_tr_B4DFD9_B4DFD9_HUMAN:371:421_5yj3_C_1 5yj3 371-421 View model · PDB
Predicted = Low TFS_tr_B4DFD9_B4DFD9_HUMAN:371:421_6e93_A_1 6e93 371-421 View model · PDB
Predicted = Low TFS_tr_B4DFD9_B4DFD9_HUMAN:371:421_6e94_A_1 6e94 371-421 View model · PDB
Predicted = Low TFS_tr_B4DFD9_B4DFD9_HUMAN:372:421_3uk3_C_1 3uk3 372-421 View model · PDB
Predicted = Low TFS_tr_B4DFD9_B4DFD9_HUMAN:372:421_4is1_C_1 4is1 372-421 View model · PDB
Predicted = Low TFS_tr_B4DFD9_B4DFD9_HUMAN:372:423_3uk3_D_1 3uk3 372-423 View model · PDB
Predicted = Low TFS_tr_B4DFD9_B4DFD9_HUMAN:372:423_4is1_D_1 4is1 372-423 View model · PDB
Predicted = Low TFS_tr_B4DFD9_B4DFD9_HUMAN:372:428_8e3e_A_1 8e3e 372-428 View model · PDB

Model-summary evidence imported for this region.

RankTemplateDomainN-tailsC-tailsChainsIdentity / similarityCoverageModel file
1 8cuc 368:481 370 421 P:F · DNA:A,B 61.5% / 75.0% 96 View · PDB TFS_tr_B4DFD9_B4DFD9_HUMAN:370:421_8cuc_F_1
2 8a4i 368:481 370 421 P:I · DNA:A,B 61.5% / 75.0% 96 View · PDB TFS_tr_B4DFD9_B4DFD9_HUMAN:370:421_8a4i_I_1
3 6e94 368:481 371 421 P:A · DNA:C,D 49.0% / 66.7% 45 View · PDB TFS_tr_B4DFD9_B4DFD9_HUMAN:371:421_6e94_A_1
4 6e93 368:481 371 421 P:A · DNA:C,D 49.0% / 66.7% 45 View · PDB TFS_tr_B4DFD9_B4DFD9_HUMAN:371:421_6e93_A_1
5 8e3e 368:481 372 428 P:A · DNA:X,Y 45.6% / 63.2% 51 View · PDB TFS_tr_B4DFD9_B4DFD9_HUMAN:372:428_8e3e_A_1
1 1llm 368:481 372,372 417,417 P:C,D · DNA:A,B 39.1% / 58.7% 52,54 View · PDB DIMER_tr_B4DFD9_B4DFD9_HUMAN:372:417_1llm_D_1

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
399-421PF00096Zinc finger, C2H2 typeoverlaps 370-428
453-474PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
674-697PF13912C2H2-type zinc fingerNo overlap with loaded model regions