Region 522-643 0 PWM
- Residues
- 122 aa
- Domains
- PF03638 · Tesmin/TSO1-like CXC domain, cysteine-rich domain PF03638 · Tesmin/TSO1-like CXC domain, cysteine-rich domain
- 3D models
- 1 active PDB
- Templates
- 5FD3
- Sources
- Structure model
Transcription factor
B4DFU0
Protein lin-54 homolog
Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 709 aa
Motif Prediction
Only entries with a generated matrix are shown here.
Known0
No generated PWM in this category.
Nearest Neighbor (>70%)4
| Motif | Prediction | Source | DNA binding | Support | Logo | Actions |
|---|---|---|---|---|---|---|
| MA0619.1 | NN 70+% | JASPAR | ATTTGAATT | 81.1% identity | Open · Scan | |
| M02527_2.00 | NN 70+% | CisBP | AATTCAAAT | 79.3% identity | Open · Scan | |
| M01320_2.00 | NN 70+% | CisBP | AATTCAAAT | 78.4% identity | Open · Scan | |
| M02531_2.00 | NN 70+% | CisBP | AAATTCAAAT | 74.1% identity | Open · Scan |
Nearest Neighbor (70% - 40%)3
| Motif | Prediction | Source | DNA binding | Support | Logo | Actions |
|---|---|---|---|---|---|---|
| M02529_2.00 | NN 70-40% | CisBP | TTTCAAAT | 69.8% identity | Open · Scan | |
| M02520_2.00 | NN 70-40% | CisBP | ATTTAAAC | 52.6% identity | Open · Scan | |
| M02533_2.00 | NN 70-40% | CisBP | AATTCAAAT | 50.8% identity | Open · Scan |
ModCRE0
No generated PWM in this category.
Model-supported DNA-binding regions
Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.
1
709 aa
522-643
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
1 active PDB model
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
Region 522-6431 model
| Actions | ||||
|---|---|---|---|---|
| Predicted = Low | TFS_B4DFU0:522:643_5fd3_A_1 | 5fd3 | 522-643 | View model · PDB |
View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.
Domains
Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.
| Residues | PFAM | Domain | Used by prediction region? |
|---|---|---|---|
| 523-557 | PF03638 | Tesmin/TSO1-like CXC domain, cysteine-rich domain | overlaps 522-643 |
| 597-631 | PF03638 | Tesmin/TSO1-like CXC domain, cysteine-rich domain | overlaps 522-643 |