ModCRE DB

Transcription factor

B4DFU5

cDNA FLJ61226, highly similar to Zinc finger protein 133

Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 559 aa

67 Generated PWM 6 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)61
MotifPredictionSourceDNA bindingSupportLogoActions
M00944_2.00 NN 70-40% CisBP TCGCTATAA 65.0% identity Open · Scan
M00959_2.00 NN 70-40% CisBP GCCCTCCC 62.6% identity Open · Scan
M00960_2.00 NN 70-40% CisBP TGCATCCC 62.6% identity Open · Scan
M00948_2.00 NN 70-40% CisBP GCAGCACC 60.2% identity Open · Scan
M00952_2.00 NN 70-40% CisBP GGATGCTC 60.0% identity Open · Scan
M00953_2.00 NN 70-40% CisBP ATCTATAT 60.0% identity Open · Scan
M00943_2.00 NN 70-40% CisBP CCCGCTGC 58.8% identity Open · Scan
M00939_2.00 NN 70-40% CisBP CCACCTCA 57.6% identity Open · Scan
M00958_2.00 NN 70-40% CisBP CGGCATCCC 57.6% identity Open · Scan
M07658_2.00 NN 70-40% CisBP CCGCCGCAGCCGCCG 56.6% identity Open · Scan
M00950_2.00 NN 70-40% CisBP GCAGCCCA 56.4% identity Open · Scan
M04387_2.00 NN 70-40% CisBP CGTGCTCCCC 55.7% identity Open · Scan
M08325_2.00 NN 70-40% CisBP TTTTTTTTT 55.2% identity Open · Scan
M00147_2.00 NN 70-40% CisBP TGTGTGCAC 55.1% identity Open · Scan
M07610_2.00 NN 70-40% CisBP CCTTCTTCCTCCCCCCTGCCCACC 54.9% identity Open · Scan
M00955_2.00 NN 70-40% CisBP ACGTCCTCT 54.7% identity Open · Scan
M07662_2.00 NN 70-40% CisBP CCTGTGTCCTCCCTGGTCCCC 54.6% identity Open · Scan
M03671_2.00 NN 70-40% CisBP ATTACCATACAAGTGCAC 54.1% identity Open · Scan
M08887_2.00 NN 70-40% CisBP CCTCCTCCAGGAAGCCTTCCCTGA 53.7% identity Open · Scan
MA1587.1 NN 70-40% JASPAR CCTCGACCTCCTGA 53.5% identity Open · Scan
M04611_2.00 NN 70-40% CisBP CTTTCGGACAC 53.3% identity Open · Scan
M07706_2.00 NN 70-40% CisBP GTCTTTGAGAGGGCCCAGATGTTGGACTTA 53.3% identity Open · Scan
M08347_2.00 NN 70-40% CisBP GCCCTGGGCAGC 53.3% identity Open · Scan
MA0463.1 NN 70-40% JASPAR TTTCCTAGAAAGCA 53.3% identity Open · Scan
MA0463.2 NN 70-40% JASPAR ATGCTTTCGAGGAATT 53.3% identity Open · Scan
MA1124.1 NN 70-40% JASPAR CATTCATTCATTC 53.3% identity Open · Scan
M00142_2.00 NN 70-40% CisBP GTGCTCCT 53.0% identity Open · Scan
M00945_2.00 NN 70-40% CisBP CACCGCAC 52.8% identity Open · Scan
M04613_2.00 NN 70-40% CisBP CTCATGTGCTAATTACAAA 52.7% identity Open · Scan
M08329_2.00 NN 70-40% CisBP GCTGCATAGTATTCC 52.7% identity Open · Scan
M07578_2.00 NN 70-40% CisBP CAACTCTCC 52.4% identity Open · Scan
M08252_2.00 NN 70-40% CisBP CCGGCTCCAGCACCC 52.2% identity Open · Scan
M02924_2.00 NN 70-40% CisBP AGTGTTAACAGAACACCT 52.1% identity Open · Scan
M04598_2.00 NN 70-40% CisBP CGCTAACTCTCCACA 52.1% identity Open · Scan
M08245_2.00 NN 70-40% CisBP TGGTGCCTTATTCCC 52.1% identity Open · Scan
M06039_2.00 NN 70-40% CisBP TATCTGAAA 51.8% identity Open · Scan
M07579_2.00 NN 70-40% CisBP CATCTCCAGGA 51.8% identity Open · Scan
M07605_2.00 NN 70-40% CisBP TATTTTTTTTTATTTTTTTTTTTTTTTTTT 51.8% identity Open · Scan
M07700_2.00 NN 70-40% CisBP ATGTTGTGAGGAAGCCCA 51.7% identity Open · Scan
M02913_2.00 NN 70-40% CisBP TTCGTGGCATTTTTCTA 51.5% identity Open · Scan
M08267_2.00 NN 70-40% CisBP CAGTTTCATTTTCC 51.5% identity Open · Scan
M08373_2.00 NN 70-40% CisBP CCCCCTGGCTCTTCCTCT 51.4% identity Open · Scan
M04590_2.00 NN 70-40% CisBP TGCGCTAACCATTGC 51.2% identity Open · Scan
M07593_2.00 NN 70-40% CisBP AGATGAAGTCACCCCTCTTAC 51.2% identity Open · Scan
M08283_2.00 NN 70-40% CisBP GACTTTTATTTT 51.0% identity Open · Scan
M08944_2.00 NN 70-40% CisBP TACCATGCTGTTTTGATTAC 51.0% identity Open · Scan
M00782_2.00 NN 70-40% CisBP AGTGTGCGCTA 50.9% identity Open · Scan
M08935_2.00 NN 70-40% CisBP CCTCCTCCCTCAGACC 50.8% identity Open · Scan
M07581_2.00 NN 70-40% CisBP TCCCCTGTGCTTCTCTCCCCT 50.6% identity Open · Scan
M08355_2.00 NN 70-40% CisBP GCGAACTCCTATTCATCC 50.6% identity Open · Scan
M07649_2.00 NN 70-40% CisBP CCCCCCCCCCCCTCAGGAATGCC 50.5% identity Open · Scan
M04505_2.00 NN 70-40% CisBP AGCTTTTCCCACAC 50.3% identity Open · Scan
M07683_2.00 NN 70-40% CisBP GTGGGAAAGCCT 50.3% identity Open · Scan
M07712_2.00 NN 70-40% CisBP ACATTTTTTTAATCTAAAAAAACATTTACA 50.3% identity Open · Scan
MA1601.1 NN 70-40% JASPAR ATGTGGGAAA 50.3% identity Open · Scan
M07646_2.00 NN 70-40% CisBP CTTTTTTTT 50.2% identity Open · Scan
M07689_2.00 NN 70-40% CisBP ACCCAGGCTCCTTCCATCTTGTGGCTC 50.1% identity Open · Scan
M01456_2.00 NN 70-40% CisBP GTGATCGGCG 50.0% identity Open · Scan
M08309_2.00 NN 70-40% CisBP AAAAACCCCCCTGCAGAGCCCAGCCCT 50.0% identity Open · Scan
M08312_2.00 NN 70-40% CisBP ATTGGGTTTCTGTTGCTT 50.0% identity Open · Scan
MA0744.1 NN 70-40% JASPAR ATGCAACAGGTGG 50.0% identity Open · Scan
ModCRE6
MotifPredictionSourceDNA bindingSupportLogoActions
DIMER_tr_B4DFU5_B4DFU5_HUMAN:313:364_1llm_D_1 ModCRE Homology model TCGCGCCCGCGC Region 313-364 · 1 3D model Open · Scan
TFS_tr_B4DFU5_B4DFU5_HUMAN:202:478_5v3j_E_1 ModCRE Homology model GGGCCGGGGGGGACGAGGGGGTGAGT Region 202-478 · 1 3D model Open · Scan
TFS_tr_B4DFU5_B4DFU5_HUMAN:202:478_5v3m_C_1 ModCRE Homology model CCGCCCCGGGGGGGGGGGGGGGAGAG Region 202-478 · 1 3D model Open · Scan
TFS_tr_B4DFU5_B4DFU5_HUMAN:228:506_5wjq_D_1 ModCRE Homology model GGGGAGCGCGGGGGGCGGGGCGGGGGGG Region 228-506 · 1 3D model Open · Scan
TFS_tr_B4DFU5_B4DFU5_HUMAN:268:421_2i13_A_1 ModCRE Homology model ACTGACTATTACTATGCTATT Region 268-421 · 1 3D model Open · Scan
TFS_tr_B4DFU5_B4DFU5_HUMAN:340:450_5ei9_E_1 ModCRE Homology model CCCCGGGGGGGGGCGGG Region 340-450 · 1 3D model Open · Scan

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 559 aa
202-506

Region 202-506 6 PWM

Residues
305 aa
Domains
PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type
3D models
6 active PDBs · 6 summary rows
Templates
1LLM, 2I13, 5EI9, 5V3J, 5V3M, 5WJQ
Sources
Predicted = Low
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
6 active PDB models 6 summary rows
Region 202-5066 models · 6 summary rows
Actions
Predicted = Low DIMER_tr_B4DFU5_B4DFU5_HUMAN:313:364_1llm_D_1 1llm 313-364 View model · PDB
Predicted = Low TFS_tr_B4DFU5_B4DFU5_HUMAN:202:478_5v3j_E_1 5v3j 202-478 View model · PDB
Predicted = Low TFS_tr_B4DFU5_B4DFU5_HUMAN:202:478_5v3m_C_1 5v3m 202-478 View model · PDB
Predicted = Low TFS_tr_B4DFU5_B4DFU5_HUMAN:228:506_5wjq_D_1 5wjq 228-506 View model · PDB
Predicted = Low TFS_tr_B4DFU5_B4DFU5_HUMAN:268:421_2i13_A_1 2i13 268-421 View model · PDB
Predicted = Low TFS_tr_B4DFU5_B4DFU5_HUMAN:340:450_5ei9_E_1 5ei9 340-450 View model · PDB

Model-summary evidence imported for this region.

RankTemplateDomainN-tailsC-tailsChainsIdentity / similarityCoverageModel file
5 5ei9 127:531 340 450 P:E · DNA:A,B 71.2% / 86.5% 100 View · PDB TFS_tr_B4DFU5_B4DFU5_HUMAN:340:450_5ei9_E_1
4 2i13 127:531 268 421 P:A · DNA:C,D 55.8% / 67.5% 100 View · PDB TFS_tr_B4DFU5_B4DFU5_HUMAN:268:421_2i13_A_1
1 5wjq 127:531 228 506 P:D · DNA:A,B 48.0% / 64.9% 99 View · PDB TFS_tr_B4DFU5_B4DFU5_HUMAN:228:506_5wjq_D_1
2 5v3m 127:531 202 478 P:C · DNA:A,B 47.7% / 63.9% 100 View · PDB TFS_tr_B4DFU5_B4DFU5_HUMAN:202:478_5v3m_C_1
3 5v3j 127:531 202 478 P:E · DNA:A,B 47.7% / 63.9% 100 View · PDB TFS_tr_B4DFU5_B4DFU5_HUMAN:202:478_5v3j_E_1
1 1llm 127:531 313,313 364,364 P:C,D · DNA:A,B 46.2% / 67.3% 59,61 View · PDB DIMER_tr_B4DFU5_B4DFU5_HUMAN:313:364_1llm_D_1

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
121-141PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
147-169PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
176-197PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
203-225PF00096Zinc finger, C2H2 typeoverlaps 202-506
231-253PF00096Zinc finger, C2H2 typeoverlaps 202-506
260-281PF00096Zinc finger, C2H2 typeoverlaps 202-506
287-309PF00096Zinc finger, C2H2 typeoverlaps 202-506
315-337PF00096Zinc finger, C2H2 typeoverlaps 202-506
343-365PF00096Zinc finger, C2H2 typeoverlaps 202-506
372-393PF00096Zinc finger, C2H2 typeoverlaps 202-506
400-421PF00096Zinc finger, C2H2 typeoverlaps 202-506
427-449PF00096Zinc finger, C2H2 typeoverlaps 202-506
455-477PF00096Zinc finger, C2H2 typeoverlaps 202-506
511-532PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions