ModCRE DB

Transcription factor

B4DGI1

cDNA FLJ60108, highly similar to Zinc finger protein 76

Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 428 aa

19 Generated PWM 11 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)9
MotifPredictionSourceDNA bindingSupportLogoActions
MA0088.1 NN 70-40% JASPAR GATTTCCCATAATGCCTTGC 66.0% identity Open · Scan
MA0088.2 NN 70-40% JASPAR TACCCACAATGCATTG 65.7% identity Open · Scan
M00950_2.00 NN 70-40% CisBP GCAGCCCA 58.2% identity Open · Scan
M00960_2.00 NN 70-40% CisBP TGCATCCC 58.2% identity Open · Scan
M00953_2.00 NN 70-40% CisBP ATCTATAT 56.0% identity Open · Scan
M00944_2.00 NN 70-40% CisBP TCGCTATAA 52.7% identity Open · Scan
M06466_2.00 NN 70-40% CisBP TCCGCCCCCT 50.6% identity Open · Scan
MA0752.1 NN 70-40% JASPAR TCCATCCCATAATACTC 50.3% identity Open · Scan
M04387_2.00 NN 70-40% CisBP CGTGCTCCCC 50.0% identity Open · Scan
ModCRE10
MotifPredictionSourceDNA bindingSupportLogoActions
TFS_tr_B4DGI1_B4DGI1_HUMAN:161:365_5wjq_D_1 ModCRE Homology model GGTACCCCGGGGGGAATGGGCCCCCCA Region 161-365 · 1 3D model Open · Scan
TFS_tr_B4DGI1_B4DGI1_HUMAN:162:376_5v3j_E_1 ModCRE Homology model GGGGGGCCGGGGGGGGCCCCCAG Region 162-376 · 1 3D model Open · Scan
TFS_tr_B4DGI1_B4DGI1_HUMAN:162:376_5v3m_C_1 ModCRE Homology model AGAAGGCCCGGGGGGGGGGCCTCC Region 162-376 · 1 3D model Open · Scan
TFS_tr_B4DGI1_B4DGI1_HUMAN:163:279_2jp9_A_1 ModCRE Homology model AGTGGGCGGGTGCTACC Region 163-279 · 1 3D model Open · Scan
TFS_tr_B4DGI1_B4DGI1_HUMAN:163:279_2jpa_A_1 ModCRE Homology model CACGGGGGGGCGCT Region 163-279 · 1 3D model Open · Scan
TFS_tr_B4DGI1_B4DGI1_HUMAN:163:279_6b0p_D_1 ModCRE Homology model GGGGAACCCCGC Region 163-279 · 1 3D model Open · Scan
TFS_tr_B4DGI1_B4DGI1_HUMAN:163:279_6b0q_D_1 ModCRE Homology model GGGGGGGGGCCCT Region 163-279 · 1 3D model Open · Scan
TFS_tr_B4DGI1_B4DGI1_HUMAN:176:339_2i13_A_1 ModCRE Homology model ACTTAGCTGCTACTTCTTCTG Region 176-339 · 1 3D model Open · Scan
TFS_tr_B4DGI1_B4DGI1_HUMAN:197:335_2gli_A_1 ModCRE Homology model GATAATGGGCCTGGGGGG Region 197-335 · 1 3D model Open · Scan
TFS_tr_B4DGI1_B4DGI1_HUMAN:223:368_6wmi_A_1 ModCRE Homology model CACGGCCCCCCCCTTCC Region 223-368 · 1 3D model Open · Scan

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 428 aa
161-376

Region 161-376 10 PWM

Residues
216 aa
Domains
PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type
3D models
11 active PDBs · 6 summary rows
Templates
1LLM, 2GLI, 2I13, 2JP9, 2JPA, 5V3J, 5V3M, 5WJQ, ...
Sources
Predicted = Low
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
11 active PDB models 6 summary rows
Region 161-37611 models · 6 summary rows
Actions
Predicted = Low DIMER_tr_B4DGI1_B4DGI1_HUMAN:223:275_1llm_D_1 1llm 223-275 View model · PDB
Predicted = Low TFS_tr_B4DGI1_B4DGI1_HUMAN:161:365_5wjq_D_1 5wjq 161-365 View model · PDB
Predicted = Low TFS_tr_B4DGI1_B4DGI1_HUMAN:162:376_5v3j_E_1 5v3j 162-376 View model · PDB
Predicted = Low TFS_tr_B4DGI1_B4DGI1_HUMAN:162:376_5v3m_C_1 5v3m 162-376 View model · PDB
Predicted = Low TFS_tr_B4DGI1_B4DGI1_HUMAN:163:279_2jp9_A_1 2jp9 163-279 View model · PDB
Predicted = Low TFS_tr_B4DGI1_B4DGI1_HUMAN:163:279_2jpa_A_1 2jpa 163-279 View model · PDB
Predicted = Low TFS_tr_B4DGI1_B4DGI1_HUMAN:163:279_6b0p_D_1 6b0p 163-279 View model · PDB
Predicted = Low TFS_tr_B4DGI1_B4DGI1_HUMAN:163:279_6b0q_D_1 6b0q 163-279 View model · PDB
Predicted = Low TFS_tr_B4DGI1_B4DGI1_HUMAN:176:339_2i13_A_1 2i13 176-339 View model · PDB
Predicted = Low TFS_tr_B4DGI1_B4DGI1_HUMAN:197:335_2gli_A_1 2gli 197-335 View model · PDB
Predicted = Low TFS_tr_B4DGI1_B4DGI1_HUMAN:223:368_6wmi_A_1 6wmi 223-368 View model · PDB

Model-summary evidence imported for this region.

RankTemplateDomainN-tailsC-tailsChainsIdentity / similarityCoverageModel file
1 6wmi 161:382 223 368 P:A · DNA:E,F 50.0% / 63.7% 100 View · PDB TFS_tr_B4DGI1_B4DGI1_HUMAN:223:368_6wmi_A_1
2 2i13 161:382 176 339 P:A · DNA:C,D 48.8% / 61.6% 100 View · PDB TFS_tr_B4DGI1_B4DGI1_HUMAN:176:339_2i13_A_1
1 1llm 161:382 223,223 275,275 P:C,D · DNA:A,B 47.2% / 60.4% 56,57 View · PDB DIMER_tr_B4DGI1_B4DGI1_HUMAN:223:275_1llm_D_1
3 5wjq 161:382 161 365 P:D · DNA:A,B 41.0% / 57.6% 68 View · PDB TFS_tr_B4DGI1_B4DGI1_HUMAN:161:365_5wjq_D_1
4 5v3m 161:382 162 376 P:C · DNA:A,B 38.1% / 54.4% 72 View · PDB TFS_tr_B4DGI1_B4DGI1_HUMAN:162:376_5v3m_C_1
5 5v3j 161:382 162 376 P:E · DNA:A,B 38.1% / 54.4% 72 View · PDB TFS_tr_B4DGI1_B4DGI1_HUMAN:162:376_5v3j_E_1

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
195-219PF00096Zinc finger, C2H2 typeoverlaps 161-376
225-249PF00096Zinc finger, C2H2 typeoverlaps 161-376
285-309PF00096Zinc finger, C2H2 typeoverlaps 161-376
315-339PF00096Zinc finger, C2H2 typeoverlaps 161-376
345-368PF00096Zinc finger, C2H2 typeoverlaps 161-376