ModCRE DB

Transcription factor

B4DGQ9

cDNA FLJ52642, weakly similar to Zinc finger protein 3

Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 472 aa

121 Generated PWM 6 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)117
MotifPredictionSourceDNA bindingSupportLogoActions
M00939_2.00 NN 70-40% CisBP CCACCTCA 68.2% identity Open · Scan
M08985_2.00 NN 70-40% CisBP TGAGGACCTACTGTGTGCC 63.8% identity Open · Scan
M02924_2.00 NN 70-40% CisBP AGTGTTAACAGAACACCT 62.8% identity Open · Scan
M04653_2.00 NN 70-40% CisBP GGTACGGTTGTCCATGTTGCAA 62.5% identity Open · Scan
M00959_2.00 NN 70-40% CisBP GCCCTCCC 62.3% identity Open · Scan
M00960_2.00 NN 70-40% CisBP TGCATCCC 62.3% identity Open · Scan
M08325_2.00 NN 70-40% CisBP TTTTTTTTT 62.2% identity Open · Scan
M04650_2.00 NN 70-40% CisBP GCATAACTGCCCCGCTGCC 61.8% identity Open · Scan
M00944_2.00 NN 70-40% CisBP TCGCTATAA 61.1% identity Open · Scan
M00952_2.00 NN 70-40% CisBP GGATGCTC 61.1% identity Open · Scan
M00953_2.00 NN 70-40% CisBP ATCTATAT 61.1% identity Open · Scan
M00958_2.00 NN 70-40% CisBP CGGCATCCC 61.1% identity Open · Scan
MA1124.1 NN 70-40% JASPAR CATTCATTCATTC 60.8% identity Open · Scan
M07689_2.00 NN 70-40% CisBP ACCCAGGCTCCTTCCATCTTGTGGCTC 60.2% identity Open · Scan
M00943_2.00 NN 70-40% CisBP CCCGCTGC 60.0% identity Open · Scan
M00948_2.00 NN 70-40% CisBP GCAGCACC 60.0% identity Open · Scan
M00950_2.00 NN 70-40% CisBP GCAGCCCA 60.0% identity Open · Scan
M00955_2.00 NN 70-40% CisBP ACGTCCTCT 60.0% identity Open · Scan
M04613_2.00 NN 70-40% CisBP CTCATGTGCTAATTACAAA 60.0% identity Open · Scan
M08334_2.00 NN 70-40% CisBP TTTGTTTTTTTCTGATTGCTTTTTACTTAT 59.5% identity Open · Scan
M07649_2.00 NN 70-40% CisBP CCCCCCCCCCCCTCAGGAATGCC 58.9% identity Open · Scan
M08375_2.00 NN 70-40% CisBP TTCCCCATTGGCTACTGCACCGGTCCT 58.8% identity Open · Scan
M08371_2.00 NN 70-40% CisBP CCAGACTTGTCCTCT 58.7% identity Open · Scan
M07635_2.00 NN 70-40% CisBP AAGTTTTCTTGTATTATATCT 58.6% identity Open · Scan
M07620_2.00 NN 70-40% CisBP TTGGATCTGTGGATTCATGTCTTTCAT 58.5% identity Open · Scan
M08935_2.00 NN 70-40% CisBP CCTCCTCCCTCAGACC 58.4% identity Open · Scan
M08329_2.00 NN 70-40% CisBP GCTGCATAGTATTCC 58.3% identity Open · Scan
M08944_2.00 NN 70-40% CisBP TACCATGCTGTTTTGATTAC 58.3% identity Open · Scan
M07700_2.00 NN 70-40% CisBP ATGTTGTGAGGAAGCCCA 58.2% identity Open · Scan
M08254_2.00 NN 70-40% CisBP CTGCCCTGGGACTTT 58.2% identity Open · Scan
M04610_2.00 NN 70-40% CisBP CGGCGACGCGAACAC 58.1% identity Open · Scan
M07753_2.00 NN 70-40% CisBP TGCATTCCTTGGCTTGTG 57.9% identity Open · Scan
M08309_2.00 NN 70-40% CisBP AAAAACCCCCCTGCAGAGCCCAGCCCT 57.9% identity Open · Scan
M07762_2.00 NN 70-40% CisBP GCCGCGCACAGGCTTCTAGCC 57.8% identity Open · Scan
M07579_2.00 NN 70-40% CisBP CATCTCCAGGA 57.7% identity Open · Scan
M08347_2.00 NN 70-40% CisBP GCCCTGGGCAGC 57.7% identity Open · Scan
M08395_2.00 NN 70-40% CisBP GCTGCCTACTCTTCC 57.7% identity Open · Scan
MA1587.1 NN 70-40% JASPAR CCTCGACCTCCTGA 57.4% identity Open · Scan
M08252_2.00 NN 70-40% CisBP CCGGCTCCAGCACCC 57.3% identity Open · Scan
M04465_2.00 NN 70-40% CisBP GTGATTCTTATCTTATCCTT 57.1% identity Open · Scan
M08365_2.00 NN 70-40% CisBP GCCAGCAGCCATCAG 57.0% identity Open · Scan
M07707_2.00 NN 70-40% CisBP TCCCGC 56.9% identity Open · Scan
M08267_2.00 NN 70-40% CisBP CAGTTTCATTTTCC 56.8% identity Open · Scan
M04475_2.00 NN 70-40% CisBP GATGCACGTACCGTGCCTCA 56.6% identity Open · Scan
M04505_2.00 NN 70-40% CisBP AGCTTTTCCCACAC 56.5% identity Open · Scan
M08279_2.00 NN 70-40% CisBP CCTCCCTCC 56.4% identity Open · Scan
M07686_2.00 NN 70-40% CisBP TAGCTTGTTTCCAGCCAC 56.2% identity Open · Scan
M04621_2.00 NN 70-40% CisBP AGCAATTCCGCTCA 56.1% identity Open · Scan
MA1589.1 NN 70-40% JASPAR TAGGAGTGGAATTGCTGGGTC 56.1% identity Open · Scan
M05855_2.00 NN 70-40% CisBP GTATTATACCCAGCT 55.8% identity Open · Scan
M07683_2.00 NN 70-40% CisBP GTGGGAAAGCCT 55.8% identity Open · Scan
MA1601.1 NN 70-40% JASPAR ATGTGGGAAA 55.8% identity Open · Scan
MA1656.1 NN 70-40% JASPAR CCAAGCCCAACCAG 55.8% identity Open · Scan
M08934_2.00 NN 70-40% CisBP GCTGTACCTGCTTATTAGGC 55.5% identity Open · Scan
M08901_2.00 NN 70-40% CisBP CCAGTTCACACC 55.3% identity Open · Scan
M08291_2.00 NN 70-40% CisBP AATCCAGCCCTAGACTCTCCC 55.2% identity Open · Scan
M08247_2.00 NN 70-40% CisBP AAAAATAACAAACGG 55.1% identity Open · Scan
M08386_2.00 NN 70-40% CisBP GCCTTAAAAGCTCAGCAC 55.1% identity Open · Scan
MA1594.1 NN 70-40% JASPAR AGGGGACATCACTACAGATCCCAC 55.1% identity Open · Scan
M04387_2.00 NN 70-40% CisBP CGTGCTCCCC 54.9% identity Open · Scan
M07578_2.00 NN 70-40% CisBP CAACTCTCC 54.9% identity Open · Scan
M00782_2.00 NN 70-40% CisBP AGTGTGCGCTA 54.8% identity Open · Scan
M04598_2.00 NN 70-40% CisBP CGCTAACTCTCCACA 54.7% identity Open · Scan
M07678_2.00 NN 70-40% CisBP CCCGCCCCCTCCTCCCCCTTCCCACCC 54.6% identity Open · Scan
M07588_2.00 NN 70-40% CisBP TCCTTCCCTCTTTCC 54.5% identity Open · Scan
M07593_2.00 NN 70-40% CisBP AGATGAAGTCACCCCTCTTAC 54.4% identity Open · Scan
M07610_2.00 NN 70-40% CisBP CCTTCTTCCTCCCCCCTGCCCACC 54.4% identity Open · Scan
M07725_2.00 NN 70-40% CisBP AAGCACTGTACT 54.4% identity Open · Scan
M08255_2.00 NN 70-40% CisBP CTCTTCCGGT 54.4% identity Open · Scan
M08283_2.00 NN 70-40% CisBP GACTTTTATTTT 54.2% identity Open · Scan
M08342_2.00 NN 70-40% CisBP GCTCTGCCTCCCTCT 54.2% identity Open · Scan
M07590_2.00 NN 70-40% CisBP TTTTTTTCTTTTATTTTTTTTTTTTTTTTTTTT 54.0% identity Open · Scan
M07567_2.00 NN 70-40% CisBP CCACTCCACTCA 53.8% identity Open · Scan
M07648_2.00 NN 70-40% CisBP GCTTGCAAAAAAAATTTAACTCCCAGCTC 53.6% identity Open · Scan
MA1602.1 NN 70-40% JASPAR CGTCTACACGGG 53.5% identity Open · Scan
M08860_2.00 NN 70-40% CisBP TCTTATAAGGGCACTAATCCCATT 53.4% identity Open · Scan
M07566_2.00 NN 70-40% CisBP TCAAACCATCCTTGC 53.3% identity Open · Scan
M07646_2.00 NN 70-40% CisBP CTTTTTTTT 53.1% identity Open · Scan
M07684_2.00 NN 70-40% CisBP CCTGTTCTTGACTTT 52.9% identity Open · Scan
M07691_2.00 NN 70-40% CisBP CCTGCAGCCACCTTGGCCTTG 52.8% identity Open · Scan
M08292_2.00 NN 70-40% CisBP TGTATTCCTTGTCATGTGTGG 52.8% identity Open · Scan
M07581_2.00 NN 70-40% CisBP TCCCCTGTGCTTCTCTCCCCT 52.7% identity Open · Scan
M07658_2.00 NN 70-40% CisBP CCGCCGCAGCCGCCG 52.7% identity Open · Scan
MA1600.1 NN 70-40% JASPAR ATACAGTCCACCCCTTTA 52.7% identity Open · Scan
M03671_2.00 NN 70-40% CisBP ATTACCATACAAGTGCAC 52.5% identity Open · Scan
M07600_2.00 NN 70-40% CisBP GCATTAGC 52.5% identity Open · Scan
M08917_2.00 NN 70-40% CisBP GCTGAGCCATGTGGGGTGCT 52.5% identity Open · Scan
M00786_2.00 NN 70-40% CisBP TATATATAT 52.3% identity Open · Scan
M04536_2.00 NN 70-40% CisBP ACGTAACCCGATACC 52.3% identity Open · Scan
M08392_2.00 NN 70-40% CisBP CTTCACCTGCTGAGG 52.2% identity Open · Scan
MA1588.1 NN 70-40% JASPAR GAATTCTTGGTTGAC 52.1% identity Open · Scan
M07582_2.00 NN 70-40% CisBP TCCCTG 52.0% identity Open · Scan
M07598_2.00 NN 70-40% CisBP CTGACAATACCAAGTGTTGAC 51.8% identity Open · Scan
M07660_2.00 NN 70-40% CisBP CCGCGCCTACCTGAGGGCGCGGGCCTGGGG 51.8% identity Open · Scan
M07667_2.00 NN 70-40% CisBP CCGCACAGGCCCCCGGGCCCC 51.8% identity Open · Scan
M00945_2.00 NN 70-40% CisBP CACCGCAC 51.7% identity Open · Scan
MA1154.1 NN 70-40% JASPAR CTTTCCCACAACACGAC 51.7% identity Open · Scan
M08335_2.00 NN 70-40% CisBP AGTCGTTGTCTG 51.6% identity Open · Scan
M07727_2.00 NN 70-40% CisBP CGCCGCCTCCCC 51.4% identity Open · Scan
MA1596.1 NN 70-40% JASPAR GCCTCAGCCTCCCGAG 51.4% identity Open · Scan
M07562_2.00 NN 70-40% CisBP GAAAAAAAC 51.3% identity Open · Scan
M05853_2.00 NN 70-40% CisBP CCACCTTTAGCCATATCT 51.2% identity Open · Scan
M07607_2.00 NN 70-40% CisBP GGCTCCACG 51.2% identity Open · Scan
M07699_2.00 NN 70-40% CisBP GGTTTAT 51.2% identity Open · Scan
MA1592.1 NN 70-40% JASPAR GGTATGAGTTCTCGCT 51.1% identity Open · Scan
M07717_2.00 NN 70-40% CisBP GGCTCCGCCCCC 50.9% identity Open · Scan
M07587_2.00 NN 70-40% CisBP CCCCCTCCCCAGTCGAGCCCCCGC 50.7% identity Open · Scan
M07777_2.00 NN 70-40% CisBP GCCAATTTCCGTGGTGTAAAT 50.7% identity Open · Scan
M00142_2.00 NN 70-40% CisBP GTGCTCCT 50.5% identity Open · Scan
M07712_2.00 NN 70-40% CisBP ACATTTTTTTAATCTAAAAAAACATTTACA 50.4% identity Open · Scan
M08256_2.00 NN 70-40% CisBP GTGCCTT 50.4% identity Open · Scan
M01044_2.00 NN 70-40% CisBP TCTCTCTTTC 50.3% identity Open · Scan
M07605_2.00 NN 70-40% CisBP TATTTTTTTTTATTTTTTTTTTTTTTTTTT 50.3% identity Open · Scan
M07746_2.00 NN 70-40% CisBP CAGCTGGCGCCCAACATGGGTCCC 50.3% identity Open · Scan
M07729_2.00 NN 70-40% CisBP CCAGACTGCCTGCCAAAACCCCCT 50.1% identity Open · Scan
M00645_2.00 NN 70-40% CisBP CGCCCACGCA 50.0% identity Open · Scan
M07764_2.00 NN 70-40% CisBP CTGCACTCTCCCCTTCCCCCCCTCCCC 50.0% identity Open · Scan
ModCRE4
MotifPredictionSourceDNA bindingSupportLogoActions
TFS_tr_B4DGQ9_B4DGQ9_HUMAN:189:458_5wjq_D_1 ModCRE Homology model GGCTGGAAAGGCGGTAGGGGAGAATCCG Region 189-458 · 1 3D model Open · Scan
TFS_tr_B4DGQ9_B4DGQ9_HUMAN:215:472_5v3j_E_1 ModCRE Homology model AAAGTGAACCACCCAAGGGGGGGG Region 215-472 · 1 3D model Open · Scan
TFS_tr_B4DGQ9_B4DGQ9_HUMAN:215:472_5v3m_C_1 ModCRE Homology model TAAAGTTGCCCGGGGGGGGTGGCCCC Region 215-472 · 1 3D model Open · Scan
TFS_tr_B4DGQ9_B4DGQ9_HUMAN:304:457_2i13_A_1 ModCRE Homology model AACTAAATGCACCTTAGTTGT Region 304-457 · 1 3D model Open · Scan

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 472 aa
189-472

Region 189-472 4 PWM

Residues
284 aa
Domains
PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type
3D models
6 active PDBs · 6 summary rows
Templates
1LLM, 2I13, 5V3J, 5V3M, 5WJQ, 7W1M
Sources
Predicted = Low
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
6 active PDB models 6 summary rows
Region 189-4726 models · 6 summary rows
Actions
Predicted = Low DIMER_tr_B4DGQ9_B4DGQ9_HUMAN:321:372_1llm_D_1 1llm 321-372 View model · PDB
Predicted = Low TFS_tr_B4DGQ9_B4DGQ9_HUMAN:189:458_5wjq_D_1 5wjq 189-458 View model · PDB
Predicted = Low TFS_tr_B4DGQ9_B4DGQ9_HUMAN:199:472_7w1m_H_1 7w1m 199-472 View model · PDB
Predicted = Low TFS_tr_B4DGQ9_B4DGQ9_HUMAN:215:472_5v3j_E_1 5v3j 215-472 View model · PDB
Predicted = Low TFS_tr_B4DGQ9_B4DGQ9_HUMAN:215:472_5v3m_C_1 5v3m 215-472 View model · PDB
Predicted = Low TFS_tr_B4DGQ9_B4DGQ9_HUMAN:304:457_2i13_A_1 2i13 304-457 View model · PDB

Model-summary evidence imported for this region.

RankTemplateDomainN-tailsC-tailsChainsIdentity / similarityCoverageModel file
4 2i13 189:472 304 457 P:A · DNA:C,D 57.8% / 68.8% 100 View · PDB TFS_tr_B4DGQ9_B4DGQ9_HUMAN:304:457_2i13_A_1
1 5wjq 189:472 189 458 P:D · DNA:A,B 49.3% / 65.6% 96 View · PDB TFS_tr_B4DGQ9_B4DGQ9_HUMAN:189:458_5wjq_D_1
2 5v3m 189:472 215 472 P:C · DNA:A,B 48.1% / 69.0% 93 View · PDB TFS_tr_B4DGQ9_B4DGQ9_HUMAN:215:472_5v3m_C_1
3 5v3j 189:472 215 472 P:E · DNA:A,B 48.1% / 69.0% 93 View · PDB TFS_tr_B4DGQ9_B4DGQ9_HUMAN:215:472_5v3j_E_1
1 1llm 189:472 321,321 372,372 P:C,D · DNA:A,B 40.4% / 59.6% 59,61 View · PDB DIMER_tr_B4DGQ9_B4DGQ9_HUMAN:321:372_1llm_D_1
5 7w1m 189:472 199 472 P:H · DNA:F,G 34.3% / 51.9% 85 View · PDB TFS_tr_B4DGQ9_B4DGQ9_HUMAN:199:472_7w1m_H_1

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
267-289PF00096Zinc finger, C2H2 typeoverlaps 189-472
295-317PF00096Zinc finger, C2H2 typeoverlaps 189-472
323-345PF00096Zinc finger, C2H2 typeoverlaps 189-472
351-373PF00096Zinc finger, C2H2 typeoverlaps 189-472
379-401PF00096Zinc finger, C2H2 typeoverlaps 189-472
407-429PF00096Zinc finger, C2H2 typeoverlaps 189-472
435-457PF00096Zinc finger, C2H2 typeoverlaps 189-472