ModCRE DB

Transcription factor

B4DGV5

cDNA FLJ53736, highly similar to Homeobox protein PKNOX1

Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 319 aa

10 Generated PWM 1 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)1
MotifPredictionSourceDNA bindingSupportLogoActions
MA0782.1 NN 70+% JASPAR TGACAGGTGTCA 99.6% identity Open · Scan
Nearest Neighbor (70% - 40%)9
MotifPredictionSourceDNA bindingSupportLogoActions
M06335_2.00 NN 70-40% CisBP ATGATACC 60.0% identity Open · Scan
MA0783.1 NN 70-40% JASPAR TGACAGGTGTCA 57.9% identity Open · Scan
M08208_2.00 NN 70-40% CisBP GAGTTGTAGT 55.8% identity Open · Scan
M02057_2.00 NN 70-40% CisBP ATTGACACGT 55.3% identity Open · Scan
M02032_2.00 NN 70-40% CisBP TGACATGTCA 55.1% identity Open · Scan
M02161_2.00 NN 70-40% CisBP TGACATGT 55.1% identity Open · Scan
M08574_2.00 NN 70-40% CisBP TTTGACAG 52.7% identity Open · Scan
M02168_2.00 NN 70-40% CisBP TTGACATGT 52.4% identity Open · Scan
MA0796.1 NN 70-40% JASPAR TGACAGCTGTCA 50.7% identity Open · Scan
ModCRE0

No generated PWM in this category.

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 319 aa
143-205

Region 143-205 0 PWM

Residues
63 aa
Domains
PF05920 · Homeobox KN domain
3D models
1 active PDB
Templates
6FQP
Sources
Structure model
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
1 active PDB model
Region 143-2051 model
Actions
Predicted = Low DIMER_B4DGV5:143:205_6fqp_B_1 6fqp 143-205 View model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
1-40PF16493TALE/MEIS homeobox family N-terminal domainNo overlap with loaded model regions
160-199PF05920Homeobox KN domainoverlaps 143-205