ModCRE DB

Transcription factor

B4DI14

cDNA FLJ59892, highly similar to Zinc finger protein 336

Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 235 aa

19 Generated PWM 6 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)14
MotifPredictionSourceDNA bindingSupportLogoActions
MA1154.1 NN 70-40% JASPAR CTTTCCCACAACACGAC 63.3% identity Open · Scan
M00780_2.00 NN 70-40% CisBP GACCCCCCGG 59.3% identity Open · Scan
MA1584.1 NN 70-40% JASPAR CGACCCCCCGCTGTGC 59.3% identity Open · Scan
M08233_2.00 NN 70-40% CisBP CCCCTGCTGGG 56.2% identity Open · Scan
MA1628.1 NN 70-40% JASPAR CACAGCAGGGG 56.2% identity Open · Scan
M07598_2.00 NN 70-40% CisBP CTGACAATACCAAGTGTTGAC 52.1% identity Open · Scan
M04653_2.00 NN 70-40% CisBP GGTACGGTTGTCCATGTTGCAA 51.7% identity Open · Scan
M06053_2.00 NN 70-40% CisBP GAAGCCATAACGGC 51.7% identity Open · Scan
M00782_2.00 NN 70-40% CisBP AGTGTGCGCTA 51.6% identity Open · Scan
M08355_2.00 NN 70-40% CisBP GCGAACTCCTATTCATCC 51.6% identity Open · Scan
MA0744.1 NN 70-40% JASPAR ATGCAACAGGTGG 51.6% identity Open · Scan
M00944_2.00 NN 70-40% CisBP TCGCTATAA 50.5% identity Open · Scan
M01883_2.00 NN 70-40% CisBP TGCCCCTGA 50.0% identity Open · Scan
M07566_2.00 NN 70-40% CisBP TCAAACCATCCTTGC 50.0% identity Open · Scan
ModCRE5
MotifPredictionSourceDNA bindingSupportLogoActions
TFS_tr_B4DI14_B4DI14_HUMAN:12:121_5ei9_E_1 ModCRE Homology model CCGGGGGAGCCGGGGCC Region 12-121 · 1 3D model Open · Scan
TFS_tr_B4DI14_B4DI14_HUMAN:2:121_5v3j_E_1 ModCRE Homology model GCGGCTGGGGGGGGGGGGAGT Region 2-121 · 1 3D model Open · Scan
TFS_tr_B4DI14_B4DI14_HUMAN:2:121_5v3m_C_1 ModCRE Homology model CGGCTGGGAGAGTGTGGTAA Region 2-121 · 1 3D model Open · Scan
TFS_tr_B4DI14_B4DI14_HUMAN:2:128_2i13_A_1 ModCRE Homology model GGGGAGCGGCCGTAGGGTAAA Region 2-128 · 1 3D model Open · Scan
TFS_tr_B4DI14_B4DI14_HUMAN:2:128_5wjq_D_1 ModCRE Homology model CCCCCCATGCCCGGGCTGGACA Region 2-128 · 1 3D model Open · Scan

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 235 aa
2-128

Region 2-128 5 PWM

Residues
127 aa
Domains
PF00096 · Zinc finger, C2H2 type PF13894 · C2H2-type zinc finger PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type
3D models
6 active PDBs · 6 summary rows
Templates
1LLM, 2I13, 5EI9, 5V3J, 5V3M, 5WJQ
Sources
Predicted = Low
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
6 active PDB models 6 summary rows
Region 2-1286 models · 6 summary rows
Actions
Predicted = Low DIMER_tr_B4DI14_B4DI14_HUMAN:41:92_1llm_C_1 1llm 41-92 View model · PDB
Predicted = Low TFS_tr_B4DI14_B4DI14_HUMAN:12:121_5ei9_E_1 5ei9 12-121 View model · PDB
Predicted = Low TFS_tr_B4DI14_B4DI14_HUMAN:2:121_5v3j_E_1 5v3j 2-121 View model · PDB
Predicted = Low TFS_tr_B4DI14_B4DI14_HUMAN:2:121_5v3m_C_1 5v3m 2-121 View model · PDB
Predicted = Low TFS_tr_B4DI14_B4DI14_HUMAN:2:128_2i13_A_1 2i13 2-128 View model · PDB
Predicted = Low TFS_tr_B4DI14_B4DI14_HUMAN:2:128_5wjq_D_1 5wjq 2-128 View model · PDB

Model-summary evidence imported for this region.

RankTemplateDomainN-tailsC-tailsChainsIdentity / similarityCoverageModel file
1 1llm 1:151 41,41 92,92 P:C,D · DNA:A,B 46.2% / 71.2% 59,61 View · PDB DIMER_tr_B4DI14_B4DI14_HUMAN:41:92_1llm_C_1
3 5v3m 1:151 2 121 P:C · DNA:A,B 45.0% / 61.7% 43 View · PDB TFS_tr_B4DI14_B4DI14_HUMAN:2:121_5v3m_C_1
4 5v3j 1:151 2 121 P:E · DNA:A,B 45.0% / 61.7% 43 View · PDB TFS_tr_B4DI14_B4DI14_HUMAN:2:121_5v3j_E_1
1 2i13 1:151 2 128 P:A · DNA:C,D 44.9% / 63.0% 82 View · PDB TFS_tr_B4DI14_B4DI14_HUMAN:2:128_2i13_A_1
5 5ei9 1:151 12 121 P:E · DNA:A,B 44.5% / 64.5% 99 View · PDB TFS_tr_B4DI14_B4DI14_HUMAN:12:121_5ei9_E_1
2 5wjq 1:151 2 128 P:D · DNA:A,B 43.3% / 59.8% 45 View · PDB TFS_tr_B4DI14_B4DI14_HUMAN:2:128_5wjq_D_1

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
15-35PF00096Zinc finger, C2H2 typeoverlaps 2-128
43-65PF13894C2H2-type zinc fingeroverlaps 2-128
73-93PF00096Zinc finger, C2H2 typeoverlaps 2-128
99-121PF00096Zinc finger, C2H2 typeoverlaps 2-128