ModCRE DB

Transcription factor

B4DI41

Methyl-CpG-binding domain protein 1 (Methyl-CpG-binding protein MBD1)

Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 656 aa

9 Generated PWM 6 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)3
MotifPredictionSourceDNA bindingSupportLogoActions
M01907_2.00 NN 70-40% CisBP TTCGCGTAAACG 52.0% identity Open · Scan
M01910_2.00 NN 70-40% CisBP GCGGAAATT 51.0% identity Open · Scan
M01921_2.00 NN 70-40% CisBP AAATTACGGA 50.0% identity Open · Scan
ModCRE6
MotifPredictionSourceDNA bindingSupportLogoActions
DIMER_tr_B4DI41_B4DI41_HUMAN:389:433_4hn6_B_1 ModCRE Homology model ACAGTGTGTGACACAA Region 389-433 · 1 3D model Open · Scan
TFS_tr_B4DI41_B4DI41_HUMAN:384:428_3qmb_A_1 ModCRE Homology model CCCCGCGGGGCC Region 384-428 · 1 3D model Open · Scan
TFS_tr_B4DI41_B4DI41_HUMAN:387:428_3qmc_A_1 ModCRE Homology model CCCCCCGGGGGC Region 387-428 · 1 3D model Open · Scan
TFS_tr_B4DI41_B4DI41_HUMAN:387:428_3qmd_A_1 ModCRE Homology model CCCCGCGGGGGC Region 387-428 · 1 3D model Open · Scan
TFS_tr_B4DI41_B4DI41_HUMAN:387:428_3qmh_A_1 ModCRE Homology model ACCCCGGCGGGG Region 387-428 · 1 3D model Open · Scan
TFS_tr_B4DI41_B4DI41_HUMAN:387:428_3qmi_A_1 ModCRE Homology model CCCCCGGCGGGG Region 387-428 · 1 3D model Open · Scan

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 656 aa
384-433

Region 384-433 6 PWM

Residues
50 aa
Domains
PF02008 · CXXC zinc finger domain
3D models
6 active PDBs · 6 summary rows
Templates
3QMB, 3QMC, 3QMD, 3QMH, 3QMI, 4HN6
Sources
Predicted = Low
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
6 active PDB models 6 summary rows
Region 384-4336 models · 6 summary rows
Actions
Predicted = Low DIMER_tr_B4DI41_B4DI41_HUMAN:389:433_4hn6_B_1 4hn6 389-433 View model · PDB
Predicted = Low TFS_tr_B4DI41_B4DI41_HUMAN:384:428_3qmb_A_1 3qmb 384-428 View model · PDB
Predicted = Low TFS_tr_B4DI41_B4DI41_HUMAN:387:428_3qmc_A_1 3qmc 387-428 View model · PDB
Predicted = Low TFS_tr_B4DI41_B4DI41_HUMAN:387:428_3qmd_A_1 3qmd 387-428 View model · PDB
Predicted = Low TFS_tr_B4DI41_B4DI41_HUMAN:387:428_3qmh_A_1 3qmh 387-428 View model · PDB
Predicted = Low TFS_tr_B4DI41_B4DI41_HUMAN:387:428_3qmi_A_1 3qmi 387-428 View model · PDB

Model-summary evidence imported for this region.

RankTemplateDomainN-tailsC-tailsChainsIdentity / similarityCoverageModel file
2 3qmd 384:434 387 428 P:A · DNA:B,C 66.7% / 69.0% 79 View · PDB TFS_tr_B4DI41_B4DI41_HUMAN:387:428_3qmd_A_1
3 3qmc 384:434 387 428 P:A · DNA:B,C 66.7% / 69.0% 79 View · PDB TFS_tr_B4DI41_B4DI41_HUMAN:387:428_3qmc_A_1
4 3qmh 384:434 387 428 P:A · DNA:B,C 66.7% / 69.0% 79 View · PDB TFS_tr_B4DI41_B4DI41_HUMAN:387:428_3qmh_A_1
5 3qmi 384:434 387 428 P:A · DNA:B,C 66.7% / 69.0% 80 View · PDB TFS_tr_B4DI41_B4DI41_HUMAN:387:428_3qmi_A_1
1 3qmb 384:434 384 428 P:A · DNA:B,C 64.4% / 66.7% 83 View · PDB TFS_tr_B4DI41_B4DI41_HUMAN:384:428_3qmb_A_1
1 4hn6 384:434 389,389 433,433 P:A,B · DNA:C,D 30.6% / 51.0% 62,62 View · PDB DIMER_tr_B4DI41_B4DI41_HUMAN:389:433_4hn6_B_1

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
28-96PF01429Methyl-CpG binding domainNo overlap with loaded model regions
195-241PF02008CXXC zinc finger domainNo overlap with loaded model regions
245-288PF02008CXXC zinc finger domainNo overlap with loaded model regions
382-428PF02008CXXC zinc finger domainoverlaps 384-433