ModCRE DB

Transcription factor

B4DI77

Transcription factor SOX-9

Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 445 aa

35 Generated PWM 1 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)2
MotifPredictionSourceDNA bindingSupportLogoActions
MA0077.1 NN 70+% JASPAR CCATTGTTC 87.0% identity Open · Scan
M03533_2.00 NN 70+% CisBP AACAATTGCATTGTT 75.0% identity Open · Scan
Nearest Neighbor (70% - 40%)33
MotifPredictionSourceDNA bindingSupportLogoActions
M00204_2.00 NN 70-40% CisBP AAAACAAT 68.3% identity Open · Scan
M03508_2.00 NN 70-40% CisBP AACAATAACATTGTT 65.3% identity Open · Scan
MA1152.1 NN 70-40% JASPAR CTATTGTTTT 65.3% identity Open · Scan
MA0078.1 NN 70-40% JASPAR CTCATTGTC 65.2% identity Open · Scan
MA1563.1 NN 70-40% JASPAR CACAATGC 65.0% identity Open · Scan
MA1561.1 NN 70-40% JASPAR ACCGAACAATG 64.4% identity Open · Scan
MA0866.1 NN 70-40% JASPAR AACAATGGTAGTGTT 64.1% identity Open · Scan
MA0867.1 NN 70-40% JASPAR GAACAATTGCAGTGTT 61.9% identity Open · Scan
M09694_2.00 NN 70-40% CisBP AACAATGGAC 61.8% identity Open · Scan
M09410_2.00 NN 70-40% CisBP TCCTTTGTTCTC 61.6% identity Open · Scan
M03537_2.00 NN 70-40% CisBP ATGAATTGCAGTCAT 61.1% identity Open · Scan
MA0142.1 NN 70-40% JASPAR CTTTGTTATGCAAAT 60.7% identity Open · Scan
MA0143.4 NN 70-40% JASPAR AAACAATGGAA 60.7% identity Open · Scan
MA0442.1 NN 70-40% JASPAR CTTTGT 60.6% identity Open · Scan
M03979_2.00 NN 70-40% CisBP AAACAATAACATTGTTT 60.5% identity Open · Scan
MA0869.1 NN 70-40% JASPAR AACAATTTCAGTGTT 60.5% identity Open · Scan
MA1562.1 NN 70-40% JASPAR CCGAACAATG 60.4% identity Open · Scan
M03983_2.00 NN 70-40% CisBP AAACAATTTCAGTGTTT 60.0% identity Open · Scan
M03516_2.00 NN 70-40% CisBP AACAATGTTCATTGTT 59.7% identity Open · Scan
M02488_2.00 NN 70-40% CisBP CATTGTTTTC 58.7% identity Open · Scan
M03974_2.00 NN 70-40% CisBP AACAATAACATTGTT 58.6% identity Open · Scan
M09408_2.00 NN 70-40% CisBP TTTTGTTTT 56.9% identity Open · Scan
MA0870.1 NN 70-40% JASPAR AACAATAACATTGTT 56.6% identity Open · Scan
M03538_2.00 NN 70-40% CisBP AAACAATGACATTGTTT 55.4% identity Open · Scan
M05769_2.00 NN 70-40% CisBP CCATTGTGAG 55.4% identity Open · Scan
MA0514.1 NN 70-40% JASPAR CCTTTGTTTT 55.4% identity Open · Scan
M00197_2.00 NN 70-40% CisBP AAAACAAT 52.8% identity Open · Scan
MA0868.1 NN 70-40% JASPAR AACAATGTGCAGTGTT 52.3% identity Open · Scan
M00212_2.00 NN 70-40% CisBP GAACAATA 50.6% identity Open · Scan
M09404_2.00 NN 70-40% CisBP TAACAATA 50.6% identity Open · Scan
M11309_2.00 NN 70-40% CisBP TTAACAATAC 50.6% identity Open · Scan
MA0087.1 NN 70-40% JASPAR ATTGTTA 50.6% identity Open · Scan
MA1120.1 NN 70-40% JASPAR AAACAATGGCA 50.6% identity Open · Scan
ModCRE0

No generated PWM in this category.

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 445 aa
103-174

Region 103-174 0 PWM

Residues
72 aa
Domains
PF00505 · HMG (high mobility group) box
3D models
1 active PDB
Templates
4EUW
Sources
Structure model
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
1 active PDB model
Region 103-1741 model
Actions
Predicted = Low TFS_B4DI77:103:174_4euw_A_1 4euw 103-174 View model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
23-94PF12444Sox developmental protein N terminalNo overlap with loaded model regions
106-173PF00505HMG (high mobility group) boxoverlaps 103-174