ModCRE DB

Transcription factor

B4DIA1

cDNA FLJ53791, highly similar to Zinc finger protein 181

Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 467 aa

70 Generated PWM 6 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)64
MotifPredictionSourceDNA bindingSupportLogoActions
M04653_2.00 NN 70-40% CisBP GGTACGGTTGTCCATGTTGCAA 65.6% identity Open · Scan
M00944_2.00 NN 70-40% CisBP TCGCTATAA 65.4% identity Open · Scan
M00960_2.00 NN 70-40% CisBP TGCATCCC 65.4% identity Open · Scan
M00950_2.00 NN 70-40% CisBP GCAGCCCA 64.2% identity Open · Scan
M00953_2.00 NN 70-40% CisBP ATCTATAT 64.2% identity Open · Scan
M02924_2.00 NN 70-40% CisBP AGTGTTAACAGAACACCT 63.7% identity Open · Scan
M00948_2.00 NN 70-40% CisBP GCAGCACC 63.0% identity Open · Scan
M00952_2.00 NN 70-40% CisBP GGATGCTC 63.0% identity Open · Scan
M00955_2.00 NN 70-40% CisBP ACGTCCTCT 63.0% identity Open · Scan
M00958_2.00 NN 70-40% CisBP CGGCATCCC 63.0% identity Open · Scan
M00943_2.00 NN 70-40% CisBP CCCGCTGC 61.9% identity Open · Scan
M00959_2.00 NN 70-40% CisBP GCCCTCCC 61.9% identity Open · Scan
MA1124.1 NN 70-40% JASPAR CATTCATTCATTC 61.2% identity Open · Scan
M08985_2.00 NN 70-40% CisBP TGAGGACCTACTGTGTGCC 61.0% identity Open · Scan
M07678_2.00 NN 70-40% CisBP CCCGCCCCCTCCTCCCCCTTCCCACCC 60.1% identity Open · Scan
M04650_2.00 NN 70-40% CisBP GCATAACTGCCCCGCTGCC 59.4% identity Open · Scan
M04621_2.00 NN 70-40% CisBP AGCAATTCCGCTCA 58.1% identity Open · Scan
M08325_2.00 NN 70-40% CisBP TTTTTTTTT 58.0% identity Open · Scan
M07702_2.00 NN 70-40% CisBP CTTCTTCCTTGG 56.3% identity Open · Scan
M00945_2.00 NN 70-40% CisBP CACCGCAC 55.8% identity Open · Scan
M04387_2.00 NN 70-40% CisBP CGTGCTCCCC 55.8% identity Open · Scan
M00939_2.00 NN 70-40% CisBP CCACCTCA 55.6% identity Open · Scan
M04598_2.00 NN 70-40% CisBP CGCTAACTCTCCACA 55.6% identity Open · Scan
M07753_2.00 NN 70-40% CisBP TGCATTCCTTGGCTTGTG 55.6% identity Open · Scan
M08395_2.00 NN 70-40% CisBP GCTGCCTACTCTTCC 55.4% identity Open · Scan
M01456_2.00 NN 70-40% CisBP GTGATCGGCG 54.7% identity Open · Scan
M08314_2.00 NN 70-40% CisBP ATTCATCAAGGTCCTCAACAATGG 54.5% identity Open · Scan
M08267_2.00 NN 70-40% CisBP CAGTTTCATTTTCC 54.4% identity Open · Scan
M08254_2.00 NN 70-40% CisBP CTGCCCTGGGACTTT 54.2% identity Open · Scan
M08300_2.00 NN 70-40% CisBP CTGCCCAATTCAT 54.0% identity Open · Scan
M08375_2.00 NN 70-40% CisBP TTCCCCATTGGCTACTGCACCGGTCCT 54.0% identity Open · Scan
M07659_2.00 NN 70-40% CisBP GTCTTCCAAGTAGCTGGTGTT 53.9% identity Open · Scan
M07731_2.00 NN 70-40% CisBP TTTCCCAGCAGCAACAGCACCGCCCCCCCC 53.9% identity Open · Scan
M08234_2.00 NN 70-40% CisBP GTCAACTTGACTGGGCCA 53.9% identity Open · Scan
M07656_2.00 NN 70-40% CisBP TGTCTAGTAAGTCTA 53.5% identity Open · Scan
M04611_2.00 NN 70-40% CisBP CTTTCGGACAC 53.4% identity Open · Scan
M08329_2.00 NN 70-40% CisBP GCTGCATAGTATTCC 53.2% identity Open · Scan
MA1602.1 NN 70-40% JASPAR CGTCTACACGGG 53.0% identity Open · Scan
M07683_2.00 NN 70-40% CisBP GTGGGAAAGCCT 52.8% identity Open · Scan
M08901_2.00 NN 70-40% CisBP CCAGTTCACACC 52.8% identity Open · Scan
MA1601.1 NN 70-40% JASPAR ATGTGGGAAA 52.8% identity Open · Scan
M00782_2.00 NN 70-40% CisBP AGTGTGCGCTA 52.3% identity Open · Scan
M08255_2.00 NN 70-40% CisBP CTCTTCCGGT 52.3% identity Open · Scan
M08355_2.00 NN 70-40% CisBP GCGAACTCCTATTCATCC 52.3% identity Open · Scan
M04475_2.00 NN 70-40% CisBP GATGCACGTACCGTGCCTCA 52.2% identity Open · Scan
M07601_2.00 NN 70-40% CisBP CAGATGCCGGCACCATGCTTC 52.2% identity Open · Scan
M08392_2.00 NN 70-40% CisBP CTTCACCTGCTGAGG 52.2% identity Open · Scan
M07628_2.00 NN 70-40% CisBP AGTGGTTCTGCTTCT 52.0% identity Open · Scan
M08334_2.00 NN 70-40% CisBP TTTGTTTTTTTCTGATTGCTTTTTACTTAT 51.7% identity Open · Scan
MA1154.1 NN 70-40% JASPAR CTTTCCCACAACACGAC 51.7% identity Open · Scan
MA1656.1 NN 70-40% JASPAR CCAAGCCCAACCAG 51.7% identity Open · Scan
M08357_2.00 NN 70-40% CisBP GAGCCTGCTACTGAGCCTGGG 51.6% identity Open · Scan
M04613_2.00 NN 70-40% CisBP CTCATGTGCTAATTACAAA 51.5% identity Open · Scan
M07633_2.00 NN 70-40% CisBP CTCTCGTTGTGCCTTTGCCAT 51.3% identity Open · Scan
M08247_2.00 NN 70-40% CisBP AAAAATAACAAACGG 51.3% identity Open · Scan
M04465_2.00 NN 70-40% CisBP GTGATTCTTATCTTATCCTT 51.0% identity Open · Scan
M07562_2.00 NN 70-40% CisBP GAAAAAAAC 51.0% identity Open · Scan
M07712_2.00 NN 70-40% CisBP ACATTTTTTTAATCTAAAAAAACATTTACA 50.5% identity Open · Scan
M08367_2.00 NN 70-40% CisBP GGGGTGATGACCACTCTGGCTTCTTAC 50.4% identity Open · Scan
MA1588.1 NN 70-40% JASPAR GAATTCTTGGTTGAC 50.4% identity Open · Scan
M05844_2.00 NN 70-40% CisBP TCACCTGT 50.0% identity Open · Scan
M10391_2.00 NN 70-40% CisBP TACCCCACATTTATTTA 50.0% identity Open · Scan
MA0103.1 NN 70-40% JASPAR CACCTG 50.0% identity Open · Scan
MA0103.2 NN 70-40% JASPAR CCTCACCTG 50.0% identity Open · Scan
ModCRE6
MotifPredictionSourceDNA bindingSupportLogoActions
DIMER_tr_B4DIA1_B4DIA1_HUMAN:318:369_1llm_D_1 ModCRE Homology model GCGCGCGCCCCA Region 318-369 · 1 3D model Open · Scan
TFS_tr_B4DIA1_B4DIA1_HUMAN:199:454_5v3j_E_1 ModCRE Homology model TTCCCCGGTAGGGGGGAGACCGGGAC Region 199-454 · 1 3D model Open · Scan
TFS_tr_B4DIA1_B4DIA1_HUMAN:199:454_5v3m_C_1 ModCRE Homology model GCGCCGGGTGGGGGGGGGCGGGGGTT Region 199-454 · 1 3D model Open · Scan
TFS_tr_B4DIA1_B4DIA1_HUMAN:204:454_5wjq_D_1 ModCRE Homology model AAGGGACGTCGGGGGGGCGGCGGGGGT Region 204-454 · 1 3D model Open · Scan
TFS_tr_B4DIA1_B4DIA1_HUMAN:245:398_2i13_A_1 ModCRE Homology model TTGAATTGTTTTACTAGCTTG Region 245-398 · 1 3D model Open · Scan
TFS_tr_B4DIA1_B4DIA1_HUMAN:289:399_5ei9_E_1 ModCRE Homology model CCCAAGGGGGGGGGGCC Region 289-399 · 1 3D model Open · Scan

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 467 aa
199-454

Region 199-454 6 PWM

Residues
256 aa
Domains
PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF13912 · C2H2-type zinc finger
3D models
6 active PDBs · 6 summary rows
Templates
1LLM, 2I13, 5EI9, 5V3J, 5V3M, 5WJQ
Sources
Predicted = Low
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
6 active PDB models 6 summary rows
Region 199-4546 models · 6 summary rows
Actions
Predicted = Low DIMER_tr_B4DIA1_B4DIA1_HUMAN:318:369_1llm_D_1 1llm 318-369 View model · PDB
Predicted = Low TFS_tr_B4DIA1_B4DIA1_HUMAN:199:454_5v3j_E_1 5v3j 199-454 View model · PDB
Predicted = Low TFS_tr_B4DIA1_B4DIA1_HUMAN:199:454_5v3m_C_1 5v3m 199-454 View model · PDB
Predicted = Low TFS_tr_B4DIA1_B4DIA1_HUMAN:204:454_5wjq_D_1 5wjq 204-454 View model · PDB
Predicted = Low TFS_tr_B4DIA1_B4DIA1_HUMAN:245:398_2i13_A_1 2i13 245-398 View model · PDB
Predicted = Low TFS_tr_B4DIA1_B4DIA1_HUMAN:289:399_5ei9_E_1 5ei9 289-399 View model · PDB

Model-summary evidence imported for this region.

RankTemplateDomainN-tailsC-tailsChainsIdentity / similarityCoverageModel file
5 5ei9 199:454 289 399 P:E · DNA:A,B 60.4% / 69.4% 100 View · PDB TFS_tr_B4DIA1_B4DIA1_HUMAN:289:399_5ei9_E_1
4 2i13 199:454 245 398 P:A · DNA:C,D 55.8% / 66.9% 100 View · PDB TFS_tr_B4DIA1_B4DIA1_HUMAN:245:398_2i13_A_1
1 5v3m 199:454 199 454 P:C · DNA:A,B 44.0% / 65.4% 92 View · PDB TFS_tr_B4DIA1_B4DIA1_HUMAN:199:454_5v3m_C_1
2 5v3j 199:454 199 454 P:E · DNA:A,B 44.0% / 65.4% 92 View · PDB TFS_tr_B4DIA1_B4DIA1_HUMAN:199:454_5v3j_E_1
3 5wjq 199:454 204 454 P:D · DNA:A,B 44.0% / 64.3% 89 View · PDB TFS_tr_B4DIA1_B4DIA1_HUMAN:204:454_5wjq_D_1
1 1llm 199:454 318,318 369,369 P:C,D · DNA:A,B 42.3% / 57.7% 59,61 View · PDB DIMER_tr_B4DIA1_B4DIA1_HUMAN:318:369_1llm_D_1

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
4-44PF01352KRAB boxNo overlap with loaded model regions
236-258PF00096Zinc finger, C2H2 typeoverlaps 199-454
264-286PF00096Zinc finger, C2H2 typeoverlaps 199-454
292-314PF00096Zinc finger, C2H2 typeoverlaps 199-454
320-342PF00096Zinc finger, C2H2 typeoverlaps 199-454
348-370PF00096Zinc finger, C2H2 typeoverlaps 199-454
376-398PF00096Zinc finger, C2H2 typeoverlaps 199-454
404-426PF00096Zinc finger, C2H2 typeoverlaps 199-454
432-454PF13912C2H2-type zinc fingeroverlaps 199-454