ModCRE DB

Transcription factor

B4DK53

cDNA FLJ60618, weakly similar to Zinc finger protein 3

Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 461 aa

117 Generated PWM 6 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)112
MotifPredictionSourceDNA bindingSupportLogoActions
M00944_2.00 NN 70-40% CisBP TCGCTATAA 68.2% identity Open · Scan
M00953_2.00 NN 70-40% CisBP ATCTATAT 68.2% identity Open · Scan
MA1124.1 NN 70-40% JASPAR CATTCATTCATTC 66.6% identity Open · Scan
M00939_2.00 NN 70-40% CisBP CCACCTCA 65.8% identity Open · Scan
M00950_2.00 NN 70-40% CisBP GCAGCCCA 65.8% identity Open · Scan
M00952_2.00 NN 70-40% CisBP GGATGCTC 65.8% identity Open · Scan
M00958_2.00 NN 70-40% CisBP CGGCATCCC 65.8% identity Open · Scan
M00960_2.00 NN 70-40% CisBP TGCATCCC 65.8% identity Open · Scan
M04653_2.00 NN 70-40% CisBP GGTACGGTTGTCCATGTTGCAA 65.6% identity Open · Scan
M00943_2.00 NN 70-40% CisBP CCCGCTGC 64.7% identity Open · Scan
M00948_2.00 NN 70-40% CisBP GCAGCACC 64.7% identity Open · Scan
M00959_2.00 NN 70-40% CisBP GCCCTCCC 64.7% identity Open · Scan
M08985_2.00 NN 70-40% CisBP TGAGGACCTACTGTGTGCC 63.9% identity Open · Scan
M04650_2.00 NN 70-40% CisBP GCATAACTGCCCCGCTGCC 63.5% identity Open · Scan
M02924_2.00 NN 70-40% CisBP AGTGTTAACAGAACACCT 62.6% identity Open · Scan
M08325_2.00 NN 70-40% CisBP TTTTTTTTT 62.2% identity Open · Scan
M00955_2.00 NN 70-40% CisBP ACGTCCTCT 61.1% identity Open · Scan
M04613_2.00 NN 70-40% CisBP CTCATGTGCTAATTACAAA 60.6% identity Open · Scan
M04611_2.00 NN 70-40% CisBP CTTTCGGACAC 60.3% identity Open · Scan
M08334_2.00 NN 70-40% CisBP TTTGTTTTTTTCTGATTGCTTTTTACTTAT 59.7% identity Open · Scan
M08375_2.00 NN 70-40% CisBP TTCCCCATTGGCTACTGCACCGGTCCT 59.7% identity Open · Scan
M07689_2.00 NN 70-40% CisBP ACCCAGGCTCCTTCCATCTTGTGGCTC 59.6% identity Open · Scan
M07635_2.00 NN 70-40% CisBP AAGTTTTCTTGTATTATATCT 59.3% identity Open · Scan
M04465_2.00 NN 70-40% CisBP GTGATTCTTATCTTATCCTT 59.2% identity Open · Scan
M07620_2.00 NN 70-40% CisBP TTGGATCTGTGGATTCATGTCTTTCAT 59.2% identity Open · Scan
M07649_2.00 NN 70-40% CisBP CCCCCCCCCCCCTCAGGAATGCC 58.5% identity Open · Scan
M08329_2.00 NN 70-40% CisBP GCTGCATAGTATTCC 58.5% identity Open · Scan
M08395_2.00 NN 70-40% CisBP GCTGCCTACTCTTCC 58.5% identity Open · Scan
M08944_2.00 NN 70-40% CisBP TACCATGCTGTTTTGATTAC 58.5% identity Open · Scan
M08254_2.00 NN 70-40% CisBP CTGCCCTGGGACTTT 58.3% identity Open · Scan
M08309_2.00 NN 70-40% CisBP AAAAACCCCCCTGCAGAGCCCAGCCCT 58.3% identity Open · Scan
M08365_2.00 NN 70-40% CisBP GCCAGCAGCCATCAG 58.2% identity Open · Scan
M08347_2.00 NN 70-40% CisBP GCCCTGGGCAGC 58.1% identity Open · Scan
M07648_2.00 NN 70-40% CisBP GCTTGCAAAAAAAATTTAACTCCCAGCTC 58.0% identity Open · Scan
M08252_2.00 NN 70-40% CisBP CCGGCTCCAGCACCC 57.8% identity Open · Scan
M08279_2.00 NN 70-40% CisBP CCTCCCTCC 57.8% identity Open · Scan
M07762_2.00 NN 70-40% CisBP GCCGCGCACAGGCTTCTAGCC 57.3% identity Open · Scan
MA1587.1 NN 70-40% JASPAR CCTCGACCTCCTGA 57.2% identity Open · Scan
M08274_2.00 NN 70-40% CisBP TTACTTGCAGCCCAACGCATTCCTAAC 57.1% identity Open · Scan
M08371_2.00 NN 70-40% CisBP CCAGACTTGTCCTCT 57.1% identity Open · Scan
M08255_2.00 NN 70-40% CisBP CTCTTCCGGT 57.0% identity Open · Scan
M04610_2.00 NN 70-40% CisBP CGGCGACGCGAACAC 56.9% identity Open · Scan
M04598_2.00 NN 70-40% CisBP CGCTAACTCTCCACA 56.8% identity Open · Scan
M07707_2.00 NN 70-40% CisBP TCCCGC 56.2% identity Open · Scan
M04536_2.00 NN 70-40% CisBP ACGTAACCCGATACC 56.1% identity Open · Scan
M07700_2.00 NN 70-40% CisBP ATGTTGTGAGGAAGCCCA 56.1% identity Open · Scan
M04387_2.00 NN 70-40% CisBP CGTGCTCCCC 55.8% identity Open · Scan
M08386_2.00 NN 70-40% CisBP GCCTTAAAAGCTCAGCAC 55.8% identity Open · Scan
M07578_2.00 NN 70-40% CisBP CAACTCTCC 55.5% identity Open · Scan
MA1656.1 NN 70-40% JASPAR CCAAGCCCAACCAG 55.5% identity Open · Scan
M07646_2.00 NN 70-40% CisBP CTTTTTTTT 55.1% identity Open · Scan
M08860_2.00 NN 70-40% CisBP TCTTATAAGGGCACTAATCCCATT 55.1% identity Open · Scan
M07678_2.00 NN 70-40% CisBP CCCGCCCCCTCCTCCCCCTTCCCACCC 55.0% identity Open · Scan
M07683_2.00 NN 70-40% CisBP GTGGGAAAGCCT 55.0% identity Open · Scan
MA1601.1 NN 70-40% JASPAR ATGTGGGAAA 55.0% identity Open · Scan
M07593_2.00 NN 70-40% CisBP AGATGAAGTCACCCCTCTTAC 54.9% identity Open · Scan
M04621_2.00 NN 70-40% CisBP AGCAATTCCGCTCA 54.8% identity Open · Scan
MA1589.1 NN 70-40% JASPAR TAGGAGTGGAATTGCTGGGTC 54.8% identity Open · Scan
M07610_2.00 NN 70-40% CisBP CCTTCTTCCTCCCCCCTGCCCACC 54.6% identity Open · Scan
M07590_2.00 NN 70-40% CisBP TTTTTTTCTTTTATTTTTTTTTTTTTTTTTTTT 54.5% identity Open · Scan
M08267_2.00 NN 70-40% CisBP CAGTTTCATTTTCC 54.4% identity Open · Scan
M08291_2.00 NN 70-40% CisBP AATCCAGCCCTAGACTCTCCC 54.4% identity Open · Scan
M07658_2.00 NN 70-40% CisBP CCGCCGCAGCCGCCG 54.2% identity Open · Scan
M00782_2.00 NN 70-40% CisBP AGTGTGCGCTA 54.0% identity Open · Scan
M07699_2.00 NN 70-40% CisBP GGTTTAT 54.0% identity Open · Scan
M00786_2.00 NN 70-40% CisBP TATATATAT 53.9% identity Open · Scan
MA1602.1 NN 70-40% JASPAR CGTCTACACGGG 53.9% identity Open · Scan
M00142_2.00 NN 70-40% CisBP GTGCTCCT 53.8% identity Open · Scan
M07581_2.00 NN 70-40% CisBP TCCCCTGTGCTTCTCTCCCCT 53.8% identity Open · Scan
M07686_2.00 NN 70-40% CisBP TAGCTTGTTTCCAGCCAC 53.8% identity Open · Scan
M04505_2.00 NN 70-40% CisBP AGCTTTTCCCACAC 53.7% identity Open · Scan
MA1588.1 NN 70-40% JASPAR GAATTCTTGGTTGAC 53.7% identity Open · Scan
M07579_2.00 NN 70-40% CisBP CATCTCCAGGA 53.3% identity Open · Scan
M08901_2.00 NN 70-40% CisBP CCAGTTCACACC 53.2% identity Open · Scan
M07588_2.00 NN 70-40% CisBP TCCTTCCCTCTTTCC 53.0% identity Open · Scan
M00945_2.00 NN 70-40% CisBP CACCGCAC 52.8% identity Open · Scan
M07667_2.00 NN 70-40% CisBP CCGCACAGGCCCCCGGGCCCC 52.8% identity Open · Scan
M07684_2.00 NN 70-40% CisBP CCTGTTCTTGACTTT 52.7% identity Open · Scan
M07660_2.00 NN 70-40% CisBP CCGCGCCTACCTGAGGGCGCGGGCCTGGGG 52.6% identity Open · Scan
M07753_2.00 NN 70-40% CisBP TGCATTCCTTGGCTTGTG 52.5% identity Open · Scan
MA1154.1 NN 70-40% JASPAR CTTTCCCACAACACGAC 52.5% identity Open · Scan
M07601_2.00 NN 70-40% CisBP CAGATGCCGGCACCATGCTTC 52.4% identity Open · Scan
M07582_2.00 NN 70-40% CisBP TCCCTG 52.3% identity Open · Scan
M08342_2.00 NN 70-40% CisBP GCTCTGCCTCCCTCT 52.3% identity Open · Scan
M08934_2.00 NN 70-40% CisBP GCTGTACCTGCTTATTAGGC 52.3% identity Open · Scan
MA1600.1 NN 70-40% JASPAR ATACAGTCCACCCCTTTA 52.3% identity Open · Scan
M07587_2.00 NN 70-40% CisBP CCCCCTCCCCAGTCGAGCCCCCGC 52.2% identity Open · Scan
M08283_2.00 NN 70-40% CisBP GACTTTTATTTT 52.1% identity Open · Scan
M08392_2.00 NN 70-40% CisBP CTTCACCTGCTGAGG 52.1% identity Open · Scan
M07600_2.00 NN 70-40% CisBP GCATTAGC 52.0% identity Open · Scan
M07691_2.00 NN 70-40% CisBP CCTGCAGCCACCTTGGCCTTG 51.7% identity Open · Scan
M07567_2.00 NN 70-40% CisBP CCACTCCACTCA 51.4% identity Open · Scan
M08292_2.00 NN 70-40% CisBP TGTATTCCTTGTCATGTGTGG 51.4% identity Open · Scan
M05853_2.00 NN 70-40% CisBP CCACCTTTAGCCATATCT 51.3% identity Open · Scan
M07746_2.00 NN 70-40% CisBP CAGCTGGCGCCCAACATGGGTCCC 51.3% identity Open · Scan
M07598_2.00 NN 70-40% CisBP CTGACAATACCAAGTGTTGAC 51.2% identity Open · Scan
M07605_2.00 NN 70-40% CisBP TATTTTTTTTTATTTTTTTTTTTTTTTTTT 51.2% identity Open · Scan
M08256_2.00 NN 70-40% CisBP GTGCCTT 51.2% identity Open · Scan
M08917_2.00 NN 70-40% CisBP GCTGAGCCATGTGGGGTGCT 51.2% identity Open · Scan
M08335_2.00 NN 70-40% CisBP AGTCGTTGTCTG 51.1% identity Open · Scan
M07727_2.00 NN 70-40% CisBP CGCCGCCTCCCC 51.0% identity Open · Scan
M07764_2.00 NN 70-40% CisBP CTGCACTCTCCCCTTCCCCCCCTCCCC 51.0% identity Open · Scan
MA1596.1 NN 70-40% JASPAR GCCTCAGCCTCCCGAG 51.0% identity Open · Scan
M01474_2.00 NN 70-40% CisBP CGCCGATCAC 50.9% identity Open · Scan
M03671_2.00 NN 70-40% CisBP ATTACCATACAAGTGCAC 50.8% identity Open · Scan
M07607_2.00 NN 70-40% CisBP GGCTCCACG 50.7% identity Open · Scan
M07712_2.00 NN 70-40% CisBP ACATTTTTTTAATCTAAAAAAACATTTACA 50.4% identity Open · Scan
M07729_2.00 NN 70-40% CisBP CCAGACTGCCTGCCAAAACCCCCT 50.4% identity Open · Scan
M08311_2.00 NN 70-40% CisBP CTGGAACAGAAGGGGCGA 50.4% identity Open · Scan
M08399_2.00 NN 70-40% CisBP TACTCTGGGGCCACATGACTC 50.1% identity Open · Scan
M07693_2.00 NN 70-40% CisBP CTCCTGTGTGTGCCTTGGCTG 50.0% identity Open · Scan
M07777_2.00 NN 70-40% CisBP GCCAATTTCCGTGGTGTAAAT 50.0% identity Open · Scan
ModCRE5
MotifPredictionSourceDNA bindingSupportLogoActions
DIMER_tr_B4DK53_B4DK53_HUMAN:356:407_1llm_C_1 ModCRE Homology model CCCCGCGCGCGG Region 356-407 · 1 3D model Open · Scan
TFS_tr_B4DK53_B4DK53_HUMAN:187:461_5wjq_D_1 ModCRE Homology model GGCGCACATATATGGGGGGGCCGGGGGT Region 187-461 · 1 3D model Open · Scan
TFS_tr_B4DK53_B4DK53_HUMAN:189:461_5v3j_E_1 ModCRE Homology model GGAAATGGGGAACCGAGAGGGGGAG Region 189-461 · 1 3D model Open · Scan
TFS_tr_B4DK53_B4DK53_HUMAN:189:461_5v3m_C_1 ModCRE Homology model GTGGGCCGGTGGGGGGGTTCCGCCCC Region 189-461 · 1 3D model Open · Scan
TFS_tr_B4DK53_B4DK53_HUMAN:283:436_2i13_A_1 ModCRE Homology model ACAAAGTAGGGCTCTTTAAGC Region 283-436 · 1 3D model Open · Scan

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 461 aa
178-461

Region 178-461 5 PWM

Residues
284 aa
Domains
PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type
3D models
6 active PDBs · 6 summary rows
Templates
1LLM, 2I13, 5V3J, 5V3M, 5WJQ, 7W1M
Sources
Predicted = Low
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
6 active PDB models 6 summary rows
Region 178-4616 models · 6 summary rows
Actions
Predicted = Low DIMER_tr_B4DK53_B4DK53_HUMAN:356:407_1llm_C_1 1llm 356-407 View model · PDB
Predicted = Low TFS_tr_B4DK53_B4DK53_HUMAN:178:460_7w1m_H_1 7w1m 178-460 View model · PDB
Predicted = Low TFS_tr_B4DK53_B4DK53_HUMAN:187:461_5wjq_D_1 5wjq 187-461 View model · PDB
Predicted = Low TFS_tr_B4DK53_B4DK53_HUMAN:189:461_5v3j_E_1 5v3j 189-461 View model · PDB
Predicted = Low TFS_tr_B4DK53_B4DK53_HUMAN:189:461_5v3m_C_1 5v3m 189-461 View model · PDB
Predicted = Low TFS_tr_B4DK53_B4DK53_HUMAN:283:436_2i13_A_1 2i13 283-436 View model · PDB

Model-summary evidence imported for this region.

RankTemplateDomainN-tailsC-tailsChainsIdentity / similarityCoverageModel file
4 2i13 178:461 283 436 P:A · DNA:C,D 61.0% / 70.1% 100 View · PDB TFS_tr_B4DK53_B4DK53_HUMAN:283:436_2i13_A_1
1 5wjq 178:461 187 461 P:D · DNA:A,B 51.6% / 68.7% 97 View · PDB TFS_tr_B4DK53_B4DK53_HUMAN:187:461_5wjq_D_1
2 5v3m 178:461 189 461 P:C · DNA:A,B 48.7% / 68.5% 98 View · PDB TFS_tr_B4DK53_B4DK53_HUMAN:189:461_5v3m_C_1
3 5v3j 178:461 189 461 P:E · DNA:A,B 48.7% / 68.5% 98 View · PDB TFS_tr_B4DK53_B4DK53_HUMAN:189:461_5v3j_E_1
1 1llm 178:461 356,356 407,407 P:C,D · DNA:A,B 42.3% / 67.3% 59,61 View · PDB DIMER_tr_B4DK53_B4DK53_HUMAN:356:407_1llm_C_1
5 7w1m 178:461 178 460 P:H · DNA:F,G 32.5% / 50.3% 87 View · PDB TFS_tr_B4DK53_B4DK53_HUMAN:178:460_7w1m_H_1

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
218-240PF00096Zinc finger, C2H2 typeoverlaps 178-461
246-268PF00096Zinc finger, C2H2 typeoverlaps 178-461
274-296PF00096Zinc finger, C2H2 typeoverlaps 178-461
302-324PF00096Zinc finger, C2H2 typeoverlaps 178-461
330-352PF00096Zinc finger, C2H2 typeoverlaps 178-461
358-380PF00096Zinc finger, C2H2 typeoverlaps 178-461
386-408PF00096Zinc finger, C2H2 typeoverlaps 178-461
414-436PF00096Zinc finger, C2H2 typeoverlaps 178-461
444-461PF00096Zinc finger, C2H2 typeoverlaps 178-461