ModCRE DB

Transcription factor

B4DL26

Zinc finger protein 561

Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 350 aa

29 Generated PWM 6 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)25
MotifPredictionSourceDNA bindingSupportLogoActions
M00955_2.00 NN 70-40% CisBP ACGTCCTCT 60.0% identity Open · Scan
M00959_2.00 NN 70-40% CisBP GCCCTCCC 56.4% identity Open · Scan
M00948_2.00 NN 70-40% CisBP GCAGCACC 55.4% identity Open · Scan
M00958_2.00 NN 70-40% CisBP CGGCATCCC 55.4% identity Open · Scan
M00960_2.00 NN 70-40% CisBP TGCATCCC 55.4% identity Open · Scan
M00944_2.00 NN 70-40% CisBP TCGCTATAA 55.2% identity Open · Scan
M00950_2.00 NN 70-40% CisBP GCAGCCCA 55.2% identity Open · Scan
M00953_2.00 NN 70-40% CisBP ATCTATAT 55.2% identity Open · Scan
M02924_2.00 NN 70-40% CisBP AGTGTTAACAGAACACCT 54.8% identity Open · Scan
M08325_2.00 NN 70-40% CisBP TTTTTTTTT 54.5% identity Open · Scan
M00939_2.00 NN 70-40% CisBP CCACCTCA 54.2% identity Open · Scan
M00943_2.00 NN 70-40% CisBP CCCGCTGC 54.1% identity Open · Scan
M00952_2.00 NN 70-40% CisBP GGATGCTC 54.1% identity Open · Scan
M04598_2.00 NN 70-40% CisBP CGCTAACTCTCCACA 53.9% identity Open · Scan
MA1124.1 NN 70-40% JASPAR CATTCATTCATTC 53.2% identity Open · Scan
M04611_2.00 NN 70-40% CisBP CTTTCGGACAC 52.9% identity Open · Scan
M07733_2.00 NN 70-40% CisBP TCTTTCTCTCTCTCC 52.8% identity Open · Scan
M04650_2.00 NN 70-40% CisBP GCATAACTGCCCCGCTGCC 52.6% identity Open · Scan
M04613_2.00 NN 70-40% CisBP CTCATGTGCTAATTACAAA 52.5% identity Open · Scan
M07689_2.00 NN 70-40% CisBP ACCCAGGCTCCTTCCATCTTGTGGCTC 52.5% identity Open · Scan
M00149_2.00 NN 70-40% CisBP CGTACGCC 52.3% identity Open · Scan
M08985_2.00 NN 70-40% CisBP TGAGGACCTACTGTGTGCC 52.2% identity Open · Scan
M04387_2.00 NN 70-40% CisBP CGTGCTCCCC 51.8% identity Open · Scan
M08934_2.00 NN 70-40% CisBP GCTGTACCTGCTTATTAGGC 51.7% identity Open · Scan
M08908_2.00 NN 70-40% CisBP GCTGCTGCTTCTGCTG 50.0% identity Open · Scan
ModCRE4
MotifPredictionSourceDNA bindingSupportLogoActions
TFS_tr_B4DL26_B4DL26_HUMAN:182:335_2i13_A_1 ModCRE Homology model AAACTTCTAATAAAGATTTAT Region 182-335 · 1 3D model Open · Scan
TFS_tr_B4DL26_B4DL26_HUMAN:57:336_5wjq_D_1 ModCRE Homology model CCCGGGGGGGCCCGGGGGGCAGGGTTTT Region 57-336 · 1 3D model Open · Scan
TFS_tr_B4DL26_B4DL26_HUMAN:60:336_5v3j_E_1 ModCRE Homology model CCCCCGGGGGGGAGTGGGCCCTCAAC Region 60-336 · 1 3D model Open · Scan
TFS_tr_B4DL26_B4DL26_HUMAN:60:336_5v3m_C_1 ModCRE Homology model CCGGGGGGGGCCGGCAGGGGGGCCCC Region 60-336 · 1 3D model Open · Scan

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 350 aa
57-342

Region 57-342 4 PWM

Residues
286 aa
Domains
PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type
3D models
6 active PDBs · 6 summary rows
Templates
1LLM, 2I13, 5V3J, 5V3M, 5WJQ, 7W1M
Sources
Predicted = Low
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
6 active PDB models 6 summary rows
Region 57-3426 models · 6 summary rows
Actions
Predicted = Low DIMER_tr_B4DL26_B4DL26_HUMAN:227:280_1llm_D_1 1llm 227-280 View model · PDB
Predicted = Low TFS_tr_B4DL26_B4DL26_HUMAN:130:342_7w1m_H_1 7w1m 130-342 View model · PDB
Predicted = Low TFS_tr_B4DL26_B4DL26_HUMAN:182:335_2i13_A_1 2i13 182-335 View model · PDB
Predicted = Low TFS_tr_B4DL26_B4DL26_HUMAN:57:336_5wjq_D_1 5wjq 57-336 View model · PDB
Predicted = Low TFS_tr_B4DL26_B4DL26_HUMAN:60:336_5v3j_E_1 5v3j 60-336 View model · PDB
Predicted = Low TFS_tr_B4DL26_B4DL26_HUMAN:60:336_5v3m_C_1 5v3m 60-336 View model · PDB

Model-summary evidence imported for this region.

RankTemplateDomainN-tailsC-tailsChainsIdentity / similarityCoverageModel file
4 2i13 57:342 182 335 P:A · DNA:C,D 48.1% / 63.6% 100 View · PDB TFS_tr_B4DL26_B4DL26_HUMAN:182:335_2i13_A_1
1 5wjq 57:342 57 336 P:D · DNA:A,B 45.7% / 63.2% 99 View · PDB TFS_tr_B4DL26_B4DL26_HUMAN:57:336_5wjq_D_1
2 5v3m 57:342 60 336 P:C · DNA:A,B 43.7% / 61.4% 100 View · PDB TFS_tr_B4DL26_B4DL26_HUMAN:60:336_5v3m_C_1
3 5v3j 57:342 60 336 P:E · DNA:A,B 43.7% / 61.4% 100 View · PDB TFS_tr_B4DL26_B4DL26_HUMAN:60:336_5v3j_E_1
1 1llm 57:342 227,227 280,280 P:C,D · DNA:A,B 42.6% / 55.6% 62,63 View · PDB DIMER_tr_B4DL26_B4DL26_HUMAN:227:280_1llm_D_1
5 7w1m 57:342 130 342 P:H · DNA:F,G 34.9% / 48.2% 66 View · PDB TFS_tr_B4DL26_B4DL26_HUMAN:130:342_7w1m_H_1

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
61-83PF00096Zinc finger, C2H2 typeoverlaps 57-342
145-167PF00096Zinc finger, C2H2 typeoverlaps 57-342
177-195PF00096Zinc finger, C2H2 typeoverlaps 57-342
201-223PF00096Zinc finger, C2H2 typeoverlaps 57-342
229-251PF00096Zinc finger, C2H2 typeoverlaps 57-342
259-279PF00096Zinc finger, C2H2 typeoverlaps 57-342
285-307PF00096Zinc finger, C2H2 typeoverlaps 57-342
314-335PF00096Zinc finger, C2H2 typeoverlaps 57-342