ModCRE DB

Transcription factor

B4DL45

cDNA FLJ50794, highly similar to L-myc-1 proto-oncogene protein

Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 270 aa

10 Generated PWM 15 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)3
MotifPredictionSourceDNA bindingSupportLogoActions
M04113_2.00 NN 70-40% CisBP GCACATGGTAAGCACATGG 52.0% identity Open · Scan
MA0058.1 NN 70-40% JASPAR AACCACGTGA 52.0% identity Open · Scan
M08778_2.00 NN 70-40% CisBP GAGCACGTGGC 50.9% identity Open · Scan
ModCRE7
MotifPredictionSourceDNA bindingSupportLogoActions
DIMER_tr_B4DL45_B4DL45_HUMAN:185:237_1hlo_A_1 ModCRE Homology model ACCCACGTGGT Region 185-237 · 1 3D model Open · Scan
DIMER_tr_B4DL45_B4DL45_HUMAN:188:269_1nkp_A_1 ModCRE Homology model GGGCAGCACGTGGGCCTA Region 188-269 · 1 3D model Open · Scan
TFS_tr_B4DL45_B4DL45_HUMAN:185:237_1hlo_A_1 ModCRE Homology model CCCCACGTGGT Region 185-237 · 1 3D model Open · Scan
TFS_tr_B4DL45_B4DL45_HUMAN:185:237_1hlo_B_1 ModCRE Homology model ACACCATGTGG Region 185-237 · 1 3D model Open · Scan
TFS_tr_B4DL45_B4DL45_HUMAN:188:237_1nlw_B_1 ModCRE Homology model ACGCAGCACGTGTGCCAG Region 188-237 · 1 3D model Open · Scan
TFS_tr_B4DL45_B4DL45_HUMAN:188:269_1nkp_A_1 ModCRE Homology model AGGGCCCCCGTGGGGCCT Region 188-269 · 1 3D model Open · Scan
TFS_tr_B4DL45_B4DL45_HUMAN:188:269_1nkp_B_1 ModCRE Homology model AGGGCACACGTGGTGCCG Region 188-269 · 1 3D model Open · Scan

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 270 aa
183-269

Region 183-269 7 PWM

Residues
87 aa
Domains
PF00010 · Helix-loop-helix DNA-binding domain
3D models
15 active PDBs · 10 summary rows
Templates
1AM9, 1HLO, 1NKP, 1NLW, 5GNJ, 5I50, 8OTS, 8OTT
Sources
Predicted = Low
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
15 active PDB models 10 summary rows
Region 183-26915 models · 10 summary rows
Actions
Predicted = Low DIMER_tr_B4DL45_B4DL45_HUMAN:183:267_5i50_A_1 5i50 183-267 View model · PDB
Predicted = Low DIMER_tr_B4DL45_B4DL45_HUMAN:185:237_1hlo_A_1 1hlo 185-237 View model · PDB
Predicted = Low DIMER_tr_B4DL45_B4DL45_HUMAN:188:236_8ott_M_1 8ott 188-236 View model · PDB
Predicted = Low DIMER_tr_B4DL45_B4DL45_HUMAN:188:254_1am9_B_1 1am9 188-254 View model · PDB
Predicted = Low DIMER_tr_B4DL45_B4DL45_HUMAN:188:254_1am9_D_1 1am9 188-254 View model · PDB
Predicted = Low DIMER_tr_B4DL45_B4DL45_HUMAN:188:269_1nkp_A_1 1nkp 188-269 View model · PDB
Predicted = Low DIMER_tr_B4DL45_B4DL45_HUMAN:191:265_5gnj_I_1 5gnj 191-265 View model · PDB
Predicted = Low TFS_tr_B4DL45_B4DL45_HUMAN:183:267_5i50_A_1 5i50 183-267 View model · PDB
Predicted = Low TFS_tr_B4DL45_B4DL45_HUMAN:185:237_1hlo_A_1 1hlo 185-237 View model · PDB
Predicted = Low TFS_tr_B4DL45_B4DL45_HUMAN:185:237_1hlo_B_1 1hlo 185-237 View model · PDB
Predicted = Low TFS_tr_B4DL45_B4DL45_HUMAN:188:236_8ott_M_1 8ott 188-236 View model · PDB
Predicted = Low TFS_tr_B4DL45_B4DL45_HUMAN:188:237_1nlw_B_1 1nlw 188-237 View model · PDB
Predicted = Low TFS_tr_B4DL45_B4DL45_HUMAN:188:264_8ots_M_1 8ots 188-264 View model · PDB
Predicted = Low TFS_tr_B4DL45_B4DL45_HUMAN:188:269_1nkp_A_1 1nkp 188-269 View model · PDB
Predicted = Low TFS_tr_B4DL45_B4DL45_HUMAN:188:269_1nkp_B_1 1nkp 188-269 View model · PDB

Model-summary evidence imported for this region.

RankTemplateDomainN-tailsC-tailsChainsIdentity / similarityCoverageModel file
3 8ott 180:269 188,188 236,237 P:M,N · DNA:I,J 61.2% / 75.5% 92,96 View · PDB DIMER_tr_B4DL45_B4DL45_HUMAN:188:236_8ott_M_1
4 8ott 180:269 188,188 236,237 P:M,N · DNA:I,J 61.2% / 75.5% 92,96 View · PDB TFS_tr_B4DL45_B4DL45_HUMAN:188:236_8ott_M_1
4 1hlo 180:269 185,185 237,237 P:A,B · DNA:C,D 50.9% / 66.0% 65,71 View · PDB DIMER_tr_B4DL45_B4DL45_HUMAN:185:237_1hlo_A_1
5 1hlo 180:269 185,185 237,237 P:A,B · DNA:C,D 50.9% / 66.0% 65,71 View · PDB TFS_tr_B4DL45_B4DL45_HUMAN:185:237_1hlo_A_1
2 8ots 180:269 188 264 P:M · DNA:I,J 48.1% / 72.7% 97 View · PDB TFS_tr_B4DL45_B4DL45_HUMAN:188:264_8ots_M_1
1 1nkp 180:269 188,188 269,269 P:A,B · DNA:F,G 47.6% / 70.7% 93,97 View · PDB TFS_tr_B4DL45_B4DL45_HUMAN:188:269_1nkp_A_1
1 1nkp 180:269 188,188 269,269 P:A,B · DNA:F,G 47.6% / 70.7% 93,97 View · PDB DIMER_tr_B4DL45_B4DL45_HUMAN:188:269_1nkp_A_1
2 5i50 180:269 183,183 267,267 P:A,B · DNA:C,D 44.7% / 67.1% 92,88 View · PDB DIMER_tr_B4DL45_B4DL45_HUMAN:183:267_5i50_A_1
3 5i50 180:269 183,183 267,267 P:A,B · DNA:C,D 44.7% / 67.1% 92,88 View · PDB TFS_tr_B4DL45_B4DL45_HUMAN:183:267_5i50_A_1
5 5gnj 180:269 191,191 265,265 P:G,I · DNA:K,L 33.3% / 53.3% 98,96 View · PDB DIMER_tr_B4DL45_B4DL45_HUMAN:191:265_5gnj_I_1

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
66-132PF01056Myc amino-terminal regionNo overlap with loaded model regions
188-239PF00010Helix-loop-helix DNA-binding domainoverlaps 183-269