ModCRE DB

Transcription factor

B4DLB0 - UBTF

Upstream binding transcription factor, RNA polymerase I, isoform CRA_a (cDNA FLJ53802, highly similar to Nucleolar transcription factor 1)

Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 505 aa

15 Generated PWM 15 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)0

No generated PWM in this category.

ModCRE15
MotifPredictionSourceDNA bindingSupportLogoActions
TFS_tr_B4DLB0_B4DLB0_HUMAN:11:115_3tmm_A_1 ModCRE Homology model CGAAATTTTTAAAGCCCTCTTAAAACCG Region 11-115 · 1 3D model Open · Scan
TFS_tr_B4DLB0_B4DLB0_HUMAN:11:115_3tq6_A_1 ModCRE Homology model TTTTGAAACCACTTTTTAAACC Region 11-115 · 1 3D model Open · Scan
TFS_tr_B4DLB0_B4DLB0_HUMAN:11:115_6erp_C_1 ModCRE Homology model GCTTGAAGATTGACCCATCCCTAAGCCT Region 11-115 · 1 3D model Open · Scan
TFS_tr_B4DLB0_B4DLB0_HUMAN:11:115_6erq_C_1 ModCRE Homology model AAGATTTCCAGGGGCAATTGCCCAGAAA Region 11-115 · 1 3D model Open · Scan
TFS_tr_B4DLB0_B4DLB0_HUMAN:11:115_6hb4_A_1 ModCRE Homology model CGGTTTATAGCCGGGCTCCCGT Region 11-115 · 1 3D model Open · Scan
TFS_tr_B4DLB0_B4DLB0_HUMAN:146:211_1hry_A_1 ModCRE Homology model GCACAAAC Region 146-211 · 1 3D model Open · Scan
TFS_tr_B4DLB0_B4DLB0_HUMAN:146:211_1hrz_A_1 ModCRE Homology model GCAAAAAA Region 146-211 · 1 3D model Open · Scan
TFS_tr_B4DLB0_B4DLB0_HUMAN:146:227_1j46_A_1 ModCRE Homology model CGGCTAAACTGAGT Region 146-227 · 1 3D model Open · Scan
TFS_tr_B4DLB0_B4DLB0_HUMAN:146:227_1j47_A_1 ModCRE Homology model GGGTTCCATTTAGG Region 146-227 · 1 3D model Open · Scan
TFS_tr_B4DLB0_B4DLB0_HUMAN:146:291_2gzk_A_1 ModCRE Homology model GGGGATTTAAAAAATA Region 146-291 · 1 3D model Open · Scan
TFS_tr_B4DLB0_B4DLB0_HUMAN:148:210_6cij_N_1 ModCRE Homology model ACTTTTAAAAAAAACTT Region 148-210 · 1 3D model Open · Scan
TFS_tr_B4DLB0_B4DLB0_HUMAN:149:210_4euw_A_1 ModCRE Homology model CCTATGGATAGC Region 149-210 · 1 3D model Open · Scan
TFS_tr_B4DLB0_B4DLB0_HUMAN:149:210_4s2q_D_1 ModCRE Homology model CTATGTGTCGGGA Region 149-210 · 1 3D model Open · Scan
TFS_tr_B4DLB0_B4DLB0_HUMAN:149:211_6edb_B_1 ModCRE Homology model AAAGGACAATT Region 149-211 · 1 3D model Open · Scan
TFS_tr_B4DLB0_B4DLB0_HUMAN:150:210_6cim_N_1 ModCRE Homology model CCCCGTCACTGGGTGTT Region 150-210 · 1 3D model Open · Scan

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 505 aa
11-115
146-291

Region 11-115 5 PWM

Residues
105 aa
Domains
PF09011 · HMG-box domain
3D models
5 active PDBs
Templates
3TMM, 3TQ6, 6ERP, 6ERQ, 6HB4
Sources
Predicted = Low
Scan this region Show models

Region 146-291 10 PWM

Residues
146 aa
Domains
PF00505 · HMG (high mobility group) box PF14887 · HMG (high mobility group) box 5
3D models
10 active PDBs · 5 summary rows
Templates
1HRY, 1HRZ, 1J46, 1J47, 2GZK, 4EUW, 4S2Q, 6CIJ, ...
Sources
Predicted = Low
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
15 active PDB models 5 summary rows
Region 11-1155 models
Actions
Predicted = Low TFS_tr_B4DLB0_B4DLB0_HUMAN:11:115_3tmm_A_1 3tmm 11-115 View model · PDB
Predicted = Low TFS_tr_B4DLB0_B4DLB0_HUMAN:11:115_3tq6_A_1 3tq6 11-115 View model · PDB
Predicted = Low TFS_tr_B4DLB0_B4DLB0_HUMAN:11:115_6erp_C_1 6erp 11-115 View model · PDB
Predicted = Low TFS_tr_B4DLB0_B4DLB0_HUMAN:11:115_6erq_C_1 6erq 11-115 View model · PDB
Predicted = Low TFS_tr_B4DLB0_B4DLB0_HUMAN:11:115_6hb4_A_1 6hb4 11-115 View model · PDB
Region 146-29110 models · 5 summary rows
Actions
Predicted = Low TFS_tr_B4DLB0_B4DLB0_HUMAN:146:211_1hry_A_1 1hry 146-211 View model · PDB
Predicted = Low TFS_tr_B4DLB0_B4DLB0_HUMAN:146:211_1hrz_A_1 1hrz 146-211 View model · PDB
Predicted = Low TFS_tr_B4DLB0_B4DLB0_HUMAN:146:227_1j46_A_1 1j46 146-227 View model · PDB
Predicted = Low TFS_tr_B4DLB0_B4DLB0_HUMAN:146:227_1j47_A_1 1j47 146-227 View model · PDB
Predicted = Low TFS_tr_B4DLB0_B4DLB0_HUMAN:146:291_2gzk_A_1 2gzk 146-291 View model · PDB
Predicted = Low TFS_tr_B4DLB0_B4DLB0_HUMAN:148:210_6cij_N_1 6cij 148-210 View model · PDB
Predicted = Low TFS_tr_B4DLB0_B4DLB0_HUMAN:149:210_4euw_A_1 4euw 149-210 View model · PDB
Predicted = Low TFS_tr_B4DLB0_B4DLB0_HUMAN:149:210_4s2q_D_1 4s2q 149-210 View model · PDB
Predicted = Low TFS_tr_B4DLB0_B4DLB0_HUMAN:149:211_6edb_B_1 6edb 149-211 View model · PDB
Predicted = Low TFS_tr_B4DLB0_B4DLB0_HUMAN:150:210_6cim_N_1 6cim 150-210 View model · PDB

Model-summary evidence imported for this region.

RankTemplateDomainN-tailsC-tailsChainsIdentity / similarityCoverageModel file
1 6cij 130:227 148 210 P:N · DNA:G,M 38.1% / 58.7% 45 View · PDB TFS_tr_B4DLB0_B4DLB0_HUMAN:148:210_6cij_N_1
5 6cim 130:227 150 210 P:N · DNA:G,J 36.1% / 55.7% 64 View · PDB TFS_tr_B4DLB0_B4DLB0_HUMAN:150:210_6cim_N_1
3 4euw 130:227 149 210 P:A · DNA:B,C 29.0% / 61.3% 86 View · PDB TFS_tr_B4DLB0_B4DLB0_HUMAN:149:210_4euw_A_1
4 4s2q 130:227 149 210 P:D · DNA:A,B 29.0% / 61.3% 81 View · PDB TFS_tr_B4DLB0_B4DLB0_HUMAN:149:210_4s2q_D_1
2 2gzk 130:227 146 291 P:A · DNA:B,C 26.8% / 50.3% 91 View · PDB TFS_tr_B4DLB0_B4DLB0_HUMAN:146:291_2gzk_A_1

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
40-98PF09011HMG-box domainoverlaps 11-115
148-209PF00505HMG (high mobility group) boxoverlaps 146-291
220-304PF14887HMG (high mobility group) box 5overlaps 146-291