ModCRE DB

Transcription factor

B4DM57

cDNA FLJ60691, moderately similar to Zinc finger protein 30

Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 434 aa

83 Generated PWM 6 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)79
MotifPredictionSourceDNA bindingSupportLogoActions
M04653_2.00 NN 70-40% CisBP GGTACGGTTGTCCATGTTGCAA 66.1% identity Open · Scan
M00939_2.00 NN 70-40% CisBP CCACCTCA 65.4% identity Open · Scan
M00955_2.00 NN 70-40% CisBP ACGTCCTCT 63.5% identity Open · Scan
M05853_2.00 NN 70-40% CisBP CCACCTTTAGCCATATCT 62.0% identity Open · Scan
M08355_2.00 NN 70-40% CisBP GCGAACTCCTATTCATCC 61.2% identity Open · Scan
M00959_2.00 NN 70-40% CisBP GCCCTCCC 61.1% identity Open · Scan
M02924_2.00 NN 70-40% CisBP AGTGTTAACAGAACACCT 61.0% identity Open · Scan
M00782_2.00 NN 70-40% CisBP AGTGTGCGCTA 60.8% identity Open · Scan
M08267_2.00 NN 70-40% CisBP CAGTTTCATTTTCC 60.6% identity Open · Scan
M08375_2.00 NN 70-40% CisBP TTCCCCATTGGCTACTGCACCGGTCCT 60.3% identity Open · Scan
M00944_2.00 NN 70-40% CisBP TCGCTATAA 60.0% identity Open · Scan
M00953_2.00 NN 70-40% CisBP ATCTATAT 60.0% identity Open · Scan
M07693_2.00 NN 70-40% CisBP CTCCTGTGTGTGCCTTGGCTG 60.0% identity Open · Scan
M08335_2.00 NN 70-40% CisBP AGTCGTTGTCTG 59.9% identity Open · Scan
M07678_2.00 NN 70-40% CisBP CCCGCCCCCTCCTCCCCCTTCCCACCC 59.8% identity Open · Scan
M08334_2.00 NN 70-40% CisBP TTTGTTTTTTTCTGATTGCTTTTTACTTAT 59.7% identity Open · Scan
M00950_2.00 NN 70-40% CisBP GCAGCCCA 59.5% identity Open · Scan
M08985_2.00 NN 70-40% CisBP TGAGGACCTACTGTGTGCC 59.3% identity Open · Scan
M08263_2.00 NN 70-40% CisBP ATCTCGGCACTTTGGGAGGCCA 58.9% identity Open · Scan
M00943_2.00 NN 70-40% CisBP CCCGCTGC 58.8% identity Open · Scan
M04621_2.00 NN 70-40% CisBP AGCAATTCCGCTCA 58.5% identity Open · Scan
M07700_2.00 NN 70-40% CisBP ATGTTGTGAGGAAGCCCA 58.2% identity Open · Scan
M08245_2.00 NN 70-40% CisBP TGGTGCCTTATTCCC 58.2% identity Open · Scan
M07649_2.00 NN 70-40% CisBP CCCCCCCCCCCCTCAGGAATGCC 58.1% identity Open · Scan
M08395_2.00 NN 70-40% CisBP GCTGCCTACTCTTCC 57.8% identity Open · Scan
M00958_2.00 NN 70-40% CisBP CGGCATCCC 57.6% identity Open · Scan
M07581_2.00 NN 70-40% CisBP TCCCCTGTGCTTCTCTCCCCT 57.5% identity Open · Scan
M07689_2.00 NN 70-40% CisBP ACCCAGGCTCCTTCCATCTTGTGGCTC 57.0% identity Open · Scan
M04515_2.00 NN 70-40% CisBP TATGCTATAACAAGCAGCCCC 56.9% identity Open · Scan
M04613_2.00 NN 70-40% CisBP CTCATGTGCTAATTACAAA 56.5% identity Open · Scan
M07753_2.00 NN 70-40% CisBP TGCATTCCTTGGCTTGTG 56.5% identity Open · Scan
M08274_2.00 NN 70-40% CisBP TTACTTGCAGCCCAACGCATTCCTAAC 56.5% identity Open · Scan
M00952_2.00 NN 70-40% CisBP GGATGCTC 56.4% identity Open · Scan
M00960_2.00 NN 70-40% CisBP TGCATCCC 56.4% identity Open · Scan
M06108_2.00 NN 70-40% CisBP ACAACAACAAC 56.3% identity Open · Scan
M07579_2.00 NN 70-40% CisBP CATCTCCAGGA 56.2% identity Open · Scan
M08329_2.00 NN 70-40% CisBP GCTGCATAGTATTCC 56.1% identity Open · Scan
M07638_2.00 NN 70-40% CisBP TGCAGCTCCCTGCCC 55.7% identity Open · Scan
M07712_2.00 NN 70-40% CisBP ACATTTTTTTAATCTAAAAAAACATTTACA 55.7% identity Open · Scan
M07729_2.00 NN 70-40% CisBP CCAGACTGCCTGCCAAAACCCCCT 55.7% identity Open · Scan
M04598_2.00 NN 70-40% CisBP CGCTAACTCTCCACA 55.6% identity Open · Scan
M07684_2.00 NN 70-40% CisBP CCTGTTCTTGACTTT 55.4% identity Open · Scan
M04650_2.00 NN 70-40% CisBP GCATAACTGCCCCGCTGCC 55.1% identity Open · Scan
M08300_2.00 NN 70-40% CisBP CTGCCCAATTCAT 55.1% identity Open · Scan
M04387_2.00 NN 70-40% CisBP CGTGCTCCCC 55.0% identity Open · Scan
M08254_2.00 NN 70-40% CisBP CTGCCCTGGGACTTT 55.0% identity Open · Scan
M08247_2.00 NN 70-40% CisBP AAAAATAACAAACGG 54.8% identity Open · Scan
M07610_2.00 NN 70-40% CisBP CCTTCTTCCTCCCCCCTGCCCACC 54.7% identity Open · Scan
M08309_2.00 NN 70-40% CisBP AAAAACCCCCCTGCAGAGCCCAGCCCT 54.7% identity Open · Scan
M08292_2.00 NN 70-40% CisBP TGTATTCCTTGTCATGTGTGG 54.6% identity Open · Scan
MA1124.1 NN 70-40% JASPAR CATTCATTCATTC 54.6% identity Open · Scan
M08373_2.00 NN 70-40% CisBP CCCCCTGGCTCTTCCTCT 54.3% identity Open · Scan
M04465_2.00 NN 70-40% CisBP GTGATTCTTATCTTATCCTT 54.2% identity Open · Scan
M07605_2.00 NN 70-40% CisBP TATTTTTTTTTATTTTTTTTTTTTTTTTTT 54.1% identity Open · Scan
M07587_2.00 NN 70-40% CisBP CCCCCTCCCCAGTCGAGCCCCCGC 54.0% identity Open · Scan
M07648_2.00 NN 70-40% CisBP GCTTGCAAAAAAAATTTAACTCCCAGCTC 54.0% identity Open · Scan
M08234_2.00 NN 70-40% CisBP GTCAACTTGACTGGGCCA 54.0% identity Open · Scan
M08901_2.00 NN 70-40% CisBP CCAGTTCACACC 53.9% identity Open · Scan
M08330_2.00 NN 70-40% CisBP TGGGTGCCGGACTGCTGTTCC 53.7% identity Open · Scan
MA1656.1 NN 70-40% JASPAR CCAAGCCCAACCAG 53.7% identity Open · Scan
M04611_2.00 NN 70-40% CisBP CTTTCGGACAC 53.4% identity Open · Scan
M00945_2.00 NN 70-40% CisBP CACCGCAC 52.8% identity Open · Scan
M07634_2.00 NN 70-40% CisBP AAACGTCCACG 52.8% identity Open · Scan
M07588_2.00 NN 70-40% CisBP TCCTTCCCTCTTTCC 52.6% identity Open · Scan
M04536_2.00 NN 70-40% CisBP ACGTAACCCGATACC 52.3% identity Open · Scan
M00786_2.00 NN 70-40% CisBP TATATATAT 51.8% identity Open · Scan
M08314_2.00 NN 70-40% CisBP ATTCATCAAGGTCCTCAACAATGG 51.5% identity Open · Scan
M08325_2.00 NN 70-40% CisBP TTTTTTTTT 51.5% identity Open · Scan
MA1589.1 NN 70-40% JASPAR TAGGAGTGGAATTGCTGGGTC 51.5% identity Open · Scan
M07660_2.00 NN 70-40% CisBP CCGCGCCTACCTGAGGGCGCGGGCCTGGGG 51.3% identity Open · Scan
M07578_2.00 NN 70-40% CisBP CAACTCTCC 51.1% identity Open · Scan
M07659_2.00 NN 70-40% CisBP GTCTTCCAAGTAGCTGGTGTT 51.1% identity Open · Scan
M07633_2.00 NN 70-40% CisBP CTCTCGTTGTGCCTTTGCCAT 51.0% identity Open · Scan
M07777_2.00 NN 70-40% CisBP GCCAATTTCCGTGGTGTAAAT 51.0% identity Open · Scan
MA0528.1 NN 70-40% JASPAR GGAGGAGGAGGGGGAGGAGGA 50.9% identity Open · Scan
M07717_2.00 NN 70-40% CisBP GGCTCCGCCCCC 50.8% identity Open · Scan
M08934_2.00 NN 70-40% CisBP GCTGTACCTGCTTATTAGGC 50.4% identity Open · Scan
M08540_2.00 NN 70-40% CisBP CCCCT 50.0% identity Open · Scan
MA1154.1 NN 70-40% JASPAR CTTTCCCACAACACGAC 50.0% identity Open · Scan
ModCRE4
MotifPredictionSourceDNA bindingSupportLogoActions
TFS_tr_B4DM57_B4DM57_HUMAN:154:431_5wjq_D_1 ModCRE Homology model GGGGGGAAAAAGGGGGGGTAGTGGCAGC Region 154-431 · 1 3D model Open · Scan
TFS_tr_B4DM57_B4DM57_HUMAN:156:431_5v3j_E_1 ModCRE Homology model CACCCCCTGGGGGCCCCCAGGGGGGG Region 156-431 · 1 3D model Open · Scan
TFS_tr_B4DM57_B4DM57_HUMAN:156:431_5v3m_C_1 ModCRE Homology model GGGGCCCCCCGGGGGGGGGGGGTGGG Region 156-431 · 1 3D model Open · Scan
TFS_tr_B4DM57_B4DM57_HUMAN:194:347_2i13_A_1 ModCRE Homology model ATAAGGTAGTTGCTAGTAAAT Region 194-347 · 1 3D model Open · Scan

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 434 aa
137-431

Region 137-431 4 PWM

Residues
295 aa
Domains
PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type
3D models
6 active PDBs · 6 summary rows
Templates
1LLM, 2I13, 5V3J, 5V3M, 5WJQ, 7W1M
Sources
Predicted = Low
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
6 active PDB models 6 summary rows
Region 137-4316 models · 6 summary rows
Actions
Predicted = Low DIMER_tr_B4DM57_B4DM57_HUMAN:267:318_1llm_D_1 1llm 267-318 View model · PDB
Predicted = Low TFS_tr_B4DM57_B4DM57_HUMAN:137:427_7w1m_H_1 7w1m 137-427 View model · PDB
Predicted = Low TFS_tr_B4DM57_B4DM57_HUMAN:154:431_5wjq_D_1 5wjq 154-431 View model · PDB
Predicted = Low TFS_tr_B4DM57_B4DM57_HUMAN:156:431_5v3j_E_1 5v3j 156-431 View model · PDB
Predicted = Low TFS_tr_B4DM57_B4DM57_HUMAN:156:431_5v3m_C_1 5v3m 156-431 View model · PDB
Predicted = Low TFS_tr_B4DM57_B4DM57_HUMAN:194:347_2i13_A_1 2i13 194-347 View model · PDB

Model-summary evidence imported for this region.

RankTemplateDomainN-tailsC-tailsChainsIdentity / similarityCoverageModel file
1 5wjq 137:432 154 431 P:D · DNA:A,B 58.3% / 71.6% 98 View · PDB TFS_tr_B4DM57_B4DM57_HUMAN:154:431_5wjq_D_1
2 5v3m 137:432 156 431 P:C · DNA:A,B 56.2% / 71.7% 99 View · PDB TFS_tr_B4DM57_B4DM57_HUMAN:156:431_5v3m_C_1
3 5v3j 137:432 156 431 P:E · DNA:A,B 56.2% / 71.7% 99 View · PDB TFS_tr_B4DM57_B4DM57_HUMAN:156:431_5v3j_E_1
4 2i13 137:432 194 347 P:A · DNA:C,D 55.8% / 64.9% 100 View · PDB TFS_tr_B4DM57_B4DM57_HUMAN:194:347_2i13_A_1
1 1llm 137:432 267,267 318,318 P:C,D · DNA:A,B 48.1% / 59.6% 59,61 View · PDB DIMER_tr_B4DM57_B4DM57_HUMAN:267:318_1llm_D_1
5 7w1m 137:432 137 427 P:H · DNA:F,G 34.0% / 48.7% 90 View · PDB TFS_tr_B4DM57_B4DM57_HUMAN:137:427_7w1m_H_1

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
5-46PF01352KRAB boxNo overlap with loaded model regions
157-179PF00096Zinc finger, C2H2 typeoverlaps 137-431
185-207PF00096Zinc finger, C2H2 typeoverlaps 137-431
241-263PF00096Zinc finger, C2H2 typeoverlaps 137-431
269-291PF00096Zinc finger, C2H2 typeoverlaps 137-431
297-319PF00096Zinc finger, C2H2 typeoverlaps 137-431
325-347PF00096Zinc finger, C2H2 typeoverlaps 137-431
353-375PF00096Zinc finger, C2H2 typeoverlaps 137-431
381-403PF00096Zinc finger, C2H2 typeoverlaps 137-431
409-431PF00096Zinc finger, C2H2 typeoverlaps 137-431