Region 2-62 3 PWM
- Residues
- 61 aa
- Domains
- PF00505 · HMG (high mobility group) box
- 3D models
- 5 active PDBs · 5 summary rows
- Templates
- 1CKT, 1J5N, 4QR9, 6YOV
- Sources
- Predicted = Low
Transcription factor
B4DMG1
High mobility group protein 20A (HMG box-containing protein 20A)
Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 234 aa
Motif Prediction
Only entries with a generated matrix are shown here.
Known0
No generated PWM in this category.
Nearest Neighbor (>70%)0
No generated PWM in this category.
Nearest Neighbor (70% - 40%)1
| Motif | Prediction | Source | DNA binding | Support | Logo | Actions |
|---|---|---|---|---|---|---|
| M02487_2.00 | NN 70-40% | CisBP | TTATTATATAT | 52.5% identity | Open · Scan |
ModCRE3
| Motif | Prediction | Source | DNA binding | Support | Logo | Actions |
|---|---|---|---|---|---|---|
| TFS_tr_B4DMG1_B4DMG1_HUMAN:2:62_1j5n_A_1 | ModCRE | Homology model | CTGAACATTCAAAAT | Region 2-62 · 1 3D model | Open · Scan | |
| TFS_tr_B4DMG1_B4DMG1_HUMAN:4:58_6yov_L_1 | ModCRE | Homology model | CTTCCCACAAATTTTTTG | Region 4-58 · 1 3D model | Open · Scan | |
| TFS_tr_B4DMG1_B4DMG1_HUMAN:5:57_1ckt_A_1 | ModCRE | Homology model | GAAAAATTTGGTCGA | Region 5-57 · 1 3D model | Open · Scan |
Model-supported DNA-binding regions
Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.
1
234 aa
2-62
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
5 active PDB models
5 summary rows
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
Region 2-625 models · 5 summary rows
| Actions | ||||
|---|---|---|---|---|
| Predicted = Low | TFS_tr_B4DMG1_B4DMG1_HUMAN:2:62_1j5n_A_1 | 1j5n | 2-62 | View model · PDB |
| Predicted = Low | TFS_tr_B4DMG1_B4DMG1_HUMAN:4:58_6yov_L_1 | 6yov | 4-58 | View model · PDB |
| Predicted = Low | TFS_tr_B4DMG1_B4DMG1_HUMAN:5:57_1ckt_A_1 | 1ckt | 5-57 | View model · PDB |
| Predicted = Low | TFS_tr_B4DMG1_B4DMG1_HUMAN:5:57_4qr9_A_1 | 4qr9 | 5-57 | View model · PDB |
| Predicted = Low | TFS_tr_B4DMG1_B4DMG1_HUMAN:5:57_4qr9_B_1 | 4qr9 | 5-57 | View model · PDB |
Model-summary evidence imported for this region.
| Rank | Template | Domain | N-tails | C-tails | Chains | Identity / similarity | Coverage | Model file |
|---|---|---|---|---|---|---|---|---|
| 1 | 1j5n | 1:73 | 2 | 62 | P:A · DNA:B,C | 42.6% / 62.3% | 65 | View · PDB TFS_tr_B4DMG1_B4DMG1_HUMAN:2:62_1j5n_A_1 |
| 5 | 6yov | 1:73 | 4 | 58 | P:L · DNA:I,J | 34.5% / 60.0% | 75 | View · PDB TFS_tr_B4DMG1_B4DMG1_HUMAN:4:58_6yov_L_1 |
| 2 | 1ckt | 1:73 | 5 | 57 | P:A · DNA:B,C | 32.7% / 54.5% | 74 | View · PDB TFS_tr_B4DMG1_B4DMG1_HUMAN:5:57_1ckt_A_1 |
| 3 | 4qr9 | 1:73 | 5 | 57 | P:B · DNA:C,D,E,F | 32.7% / 54.5% | 70 | View · PDB TFS_tr_B4DMG1_B4DMG1_HUMAN:5:57_4qr9_B_1 |
| 4 | 4qr9 | 1:73 | 5 | 57 | P:A · DNA:C,D,E,F | 32.7% / 54.5% | 70 | View · PDB TFS_tr_B4DMG1_B4DMG1_HUMAN:5:57_4qr9_A_1 |
View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.
Domains
Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.
| Residues | PFAM | Domain | Used by prediction region? |
|---|---|---|---|
| 1-57 | PF00505 | HMG (high mobility group) box | overlaps 2-62 |