ModCRE DB

Transcription factor

B4DMI8

cDNA FLJ56992, highly similar to Zinc finger protein 491

Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 409 aa

54 Generated PWM 6 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)48
MotifPredictionSourceDNA bindingSupportLogoActions
M07733_2.00 NN 70-40% CisBP TCTTTCTCTCTCTCC 67.3% identity Open · Scan
M00939_2.00 NN 70-40% CisBP CCACCTCA 65.4% identity Open · Scan
M07628_2.00 NN 70-40% CisBP AGTGGTTCTGCTTCT 61.4% identity Open · Scan
M07627_2.00 NN 70-40% CisBP CAGTCACCTTCTGG 60.6% identity Open · Scan
M04653_2.00 NN 70-40% CisBP GGTACGGTTGTCCATGTTGCAA 59.6% identity Open · Scan
M00960_2.00 NN 70-40% CisBP TGCATCCC 58.3% identity Open · Scan
M07659_2.00 NN 70-40% CisBP GTCTTCCAAGTAGCTGGTGTT 58.1% identity Open · Scan
M07762_2.00 NN 70-40% CisBP GCCGCGCACAGGCTTCTAGCC 57.4% identity Open · Scan
M00943_2.00 NN 70-40% CisBP CCCGCTGC 57.1% identity Open · Scan
M00950_2.00 NN 70-40% CisBP GCAGCCCA 57.1% identity Open · Scan
MA1588.1 NN 70-40% JASPAR GAATTCTTGGTTGAC 56.6% identity Open · Scan
M00944_2.00 NN 70-40% CisBP TCGCTATAA 56.4% identity Open · Scan
M00948_2.00 NN 70-40% CisBP GCAGCACC 55.9% identity Open · Scan
M00958_2.00 NN 70-40% CisBP CGGCATCCC 55.9% identity Open · Scan
M07717_2.00 NN 70-40% CisBP GGCTCCGCCCCC 55.4% identity Open · Scan
M00952_2.00 NN 70-40% CisBP GGATGCTC 55.2% identity Open · Scan
M07770_2.00 NN 70-40% CisBP CTTGGACTT 55.0% identity Open · Scan
M07707_2.00 NN 70-40% CisBP TCCCGC 54.8% identity Open · Scan
M00959_2.00 NN 70-40% CisBP GCCCTCCC 54.7% identity Open · Scan
M08254_2.00 NN 70-40% CisBP CTGCCCTGGGACTTT 54.7% identity Open · Scan
M00953_2.00 NN 70-40% CisBP ATCTATAT 54.1% identity Open · Scan
M00955_2.00 NN 70-40% CisBP ACGTCCTCT 54.1% identity Open · Scan
M08985_2.00 NN 70-40% CisBP TGAGGACCTACTGTGTGCC 54.1% identity Open · Scan
M04598_2.00 NN 70-40% CisBP CGCTAACTCTCCACA 53.9% identity Open · Scan
M04650_2.00 NN 70-40% CisBP GCATAACTGCCCCGCTGCC 53.8% identity Open · Scan
M01474_2.00 NN 70-40% CisBP CGCCGATCAC 53.7% identity Open · Scan
M07689_2.00 NN 70-40% CisBP ACCCAGGCTCCTTCCATCTTGTGGCTC 53.7% identity Open · Scan
M08366_2.00 NN 70-40% CisBP GTTTGCTGCTTACAA 53.4% identity Open · Scan
M08908_2.00 NN 70-40% CisBP GCTGCTGCTTCTGCTG 53.4% identity Open · Scan
M08309_2.00 NN 70-40% CisBP AAAAACCCCCCTGCAGAGCCCAGCCCT 52.8% identity Open · Scan
M04387_2.00 NN 70-40% CisBP CGTGCTCCCC 52.3% identity Open · Scan
M00945_2.00 NN 70-40% CisBP CACCGCAC 52.2% identity Open · Scan
M07635_2.00 NN 70-40% CisBP AAGTTTTCTTGTATTATATCT 52.1% identity Open · Scan
M07700_2.00 NN 70-40% CisBP ATGTTGTGAGGAAGCCCA 52.0% identity Open · Scan
M00645_2.00 NN 70-40% CisBP CGCCCACGCA 51.6% identity Open · Scan
M08860_2.00 NN 70-40% CisBP TCTTATAAGGGCACTAATCCCATT 51.6% identity Open · Scan
M08279_2.00 NN 70-40% CisBP CCTCCCTCC 51.5% identity Open · Scan
M07753_2.00 NN 70-40% CisBP TGCATTCCTTGGCTTGTG 51.4% identity Open · Scan
M08901_2.00 NN 70-40% CisBP CCAGTTCACACC 51.4% identity Open · Scan
M08371_2.00 NN 70-40% CisBP CCAGACTTGTCCTCT 51.1% identity Open · Scan
M08329_2.00 NN 70-40% CisBP GCTGCATAGTATTCC 51.0% identity Open · Scan
M07678_2.00 NN 70-40% CisBP CCCGCCCCCTCCTCCCCCTTCCCACCC 50.8% identity Open · Scan
M08935_2.00 NN 70-40% CisBP CCTCCTCCCTCAGACC 50.8% identity Open · Scan
M07562_2.00 NN 70-40% CisBP GAAAAAAAC 50.4% identity Open · Scan
M07648_2.00 NN 70-40% CisBP GCTTGCAAAAAAAATTTAACTCCCAGCTC 50.2% identity Open · Scan
M07686_2.00 NN 70-40% CisBP TAGCTTGTTTCCAGCCAC 50.2% identity Open · Scan
M08375_2.00 NN 70-40% CisBP TTCCCCATTGGCTACTGCACCGGTCCT 50.1% identity Open · Scan
MA1587.1 NN 70-40% JASPAR CCTCGACCTCCTGA 50.1% identity Open · Scan
ModCRE6
MotifPredictionSourceDNA bindingSupportLogoActions
DIMER_tr_B4DMI8_B4DMI8_HUMAN:353:401_1llm_C_1 ModCRE Homology model CCACGCCGATGA Region 353-401 · 1 3D model Open · Scan
TFS_tr_B4DMI8_B4DMI8_HUMAN:103:401_7w1m_H_1 ModCRE Homology model TAAAAATTGTGGCACTAAGAGATGATGATCAGTGGGGCCCGGG Region 103-401 · 1 3D model Open · Scan
TFS_tr_B4DMI8_B4DMI8_HUMAN:130:406_5v3j_E_1 ModCRE Homology model CCCTTGGGGTTACTCCCCCCCGGGCC Region 130-406 · 1 3D model Open · Scan
TFS_tr_B4DMI8_B4DMI8_HUMAN:130:406_5v3m_C_1 ModCRE Homology model CCACGCTGTCTCTCCCCCCCATCGGG Region 130-406 · 1 3D model Open · Scan
TFS_tr_B4DMI8_B4DMI8_HUMAN:130:406_5wjq_D_1 ModCRE Homology model CCGGGCGCCATGTAACCCGGCCCGCCCC Region 130-406 · 1 3D model Open · Scan
TFS_tr_B4DMI8_B4DMI8_HUMAN:225:377_2i13_A_1 ModCRE Homology model CCACTCCCAGTAATTCTTAAT Region 225-377 · 1 3D model Open · Scan

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 409 aa
103-406

Region 103-406 6 PWM

Residues
304 aa
Domains
PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type
3D models
6 active PDBs · 6 summary rows
Templates
1LLM, 2I13, 5V3J, 5V3M, 5WJQ, 7W1M
Sources
Predicted = Low
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
6 active PDB models 6 summary rows
Region 103-4066 models · 6 summary rows
Actions
Predicted = Low DIMER_tr_B4DMI8_B4DMI8_HUMAN:353:401_1llm_C_1 1llm 353-401 View model · PDB
Predicted = Low TFS_tr_B4DMI8_B4DMI8_HUMAN:103:401_7w1m_H_1 7w1m 103-401 View model · PDB
Predicted = Low TFS_tr_B4DMI8_B4DMI8_HUMAN:130:406_5v3j_E_1 5v3j 130-406 View model · PDB
Predicted = Low TFS_tr_B4DMI8_B4DMI8_HUMAN:130:406_5v3m_C_1 5v3m 130-406 View model · PDB
Predicted = Low TFS_tr_B4DMI8_B4DMI8_HUMAN:130:406_5wjq_D_1 5wjq 130-406 View model · PDB
Predicted = Low TFS_tr_B4DMI8_B4DMI8_HUMAN:225:377_2i13_A_1 2i13 225-377 View model · PDB

Model-summary evidence imported for this region.

RankTemplateDomainN-tailsC-tailsChainsIdentity / similarityCoverageModel file
1 5wjq 97:406 130 406 P:D · DNA:A,B 50.5% / 65.0% 98 View · PDB TFS_tr_B4DMI8_B4DMI8_HUMAN:130:406_5wjq_D_1
4 2i13 97:406 225 377 P:A · DNA:C,D 49.7% / 66.7% 99 View · PDB TFS_tr_B4DMI8_B4DMI8_HUMAN:225:377_2i13_A_1
2 5v3m 97:406 130 406 P:C · DNA:A,B 48.4% / 63.9% 100 View · PDB TFS_tr_B4DMI8_B4DMI8_HUMAN:130:406_5v3m_C_1
3 5v3j 97:406 130 406 P:E · DNA:A,B 48.4% / 63.9% 100 View · PDB TFS_tr_B4DMI8_B4DMI8_HUMAN:130:406_5v3j_E_1
1 1llm 97:406 353,353 401,401 P:C,D · DNA:A,B 42.9% / 65.3% 56,57 View · PDB DIMER_tr_B4DMI8_B4DMI8_HUMAN:353:401_1llm_C_1
5 7w1m 97:406 103 401 P:H · DNA:F,G 31.8% / 48.1% 92 View · PDB TFS_tr_B4DMI8_B4DMI8_HUMAN:103:401_7w1m_H_1

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
159-181PF00096Zinc finger, C2H2 typeoverlaps 103-406
187-209PF00096Zinc finger, C2H2 typeoverlaps 103-406
243-265PF00096Zinc finger, C2H2 typeoverlaps 103-406
301-321PF00096Zinc finger, C2H2 typeoverlaps 103-406
383-405PF00096Zinc finger, C2H2 typeoverlaps 103-406