ModCRE DB

Transcription factor

B4DMT1

cDNA FLJ59934, highly similar to Homo sapiens zinc finger protein 187 (ZNF187), transcript variant 3, mRNA

Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 270 aa

57 Generated PWM 6 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)51
MotifPredictionSourceDNA bindingSupportLogoActions
M00959_2.00 NN 70-40% CisBP GCCCTCCC 62.6% identity Open · Scan
M08985_2.00 NN 70-40% CisBP TGAGGACCTACTGTGTGCC 61.5% identity Open · Scan
M00939_2.00 NN 70-40% CisBP CCACCTCA 61.4% identity Open · Scan
M00960_2.00 NN 70-40% CisBP TGCATCCC 61.4% identity Open · Scan
M00950_2.00 NN 70-40% CisBP GCAGCCCA 60.2% identity Open · Scan
M00955_2.00 NN 70-40% CisBP ACGTCCTCT 60.2% identity Open · Scan
M00943_2.00 NN 70-40% CisBP CCCGCTGC 59.0% identity Open · Scan
M00958_2.00 NN 70-40% CisBP CGGCATCCC 59.0% identity Open · Scan
M04653_2.00 NN 70-40% CisBP GGTACGGTTGTCCATGTTGCAA 59.0% identity Open · Scan
M00944_2.00 NN 70-40% CisBP TCGCTATAA 57.8% identity Open · Scan
M00948_2.00 NN 70-40% CisBP GCAGCACC 57.8% identity Open · Scan
M00952_2.00 NN 70-40% CisBP GGATGCTC 57.8% identity Open · Scan
M00953_2.00 NN 70-40% CisBP ATCTATAT 57.8% identity Open · Scan
MA1124.1 NN 70-40% JASPAR CATTCATTCATTC 57.1% identity Open · Scan
M08311_2.00 NN 70-40% CisBP CTGGAACAGAAGGGGCGA 56.1% identity Open · Scan
M07699_2.00 NN 70-40% CisBP GGTTTAT 55.3% identity Open · Scan
M04650_2.00 NN 70-40% CisBP GCATAACTGCCCCGCTGCC 54.3% identity Open · Scan
M08334_2.00 NN 70-40% CisBP TTTGTTTTTTTCTGATTGCTTTTTACTTAT 54.2% identity Open · Scan
M02924_2.00 NN 70-40% CisBP AGTGTTAACAGAACACCT 54.0% identity Open · Scan
M04611_2.00 NN 70-40% CisBP CTTTCGGACAC 53.4% identity Open · Scan
M07689_2.00 NN 70-40% CisBP ACCCAGGCTCCTTCCATCTTGTGGCTC 53.4% identity Open · Scan
MA1587.1 NN 70-40% JASPAR CCTCGACCTCCTGA 53.3% identity Open · Scan
M08325_2.00 NN 70-40% CisBP TTTTTTTTT 53.1% identity Open · Scan
MA0748.1 NN 70-40% JASPAR GTCCGCCATTA 53.1% identity Open · Scan
M08355_2.00 NN 70-40% CisBP GCGAACTCCTATTCATCC 53.0% identity Open · Scan
M04465_2.00 NN 70-40% CisBP GTGATTCTTATCTTATCCTT 52.9% identity Open · Scan
M07635_2.00 NN 70-40% CisBP AAGTTTTCTTGTATTATATCT 52.9% identity Open · Scan
M07762_2.00 NN 70-40% CisBP GCCGCGCACAGGCTTCTAGCC 52.9% identity Open · Scan
M00782_2.00 NN 70-40% CisBP AGTGTGCGCTA 52.6% identity Open · Scan
M08917_2.00 NN 70-40% CisBP GCTGAGCCATGTGGGGTGCT 52.4% identity Open · Scan
M00149_2.00 NN 70-40% CisBP CGTACGCC 52.0% identity Open · Scan
M04387_2.00 NN 70-40% CisBP CGTGCTCCCC 51.8% identity Open · Scan
M04475_2.00 NN 70-40% CisBP GATGCACGTACCGTGCCTCA 51.8% identity Open · Scan
M08267_2.00 NN 70-40% CisBP CAGTTTCATTTTCC 51.8% identity Open · Scan
M00945_2.00 NN 70-40% CisBP CACCGCAC 51.7% identity Open · Scan
MA1656.1 NN 70-40% JASPAR CCAAGCCCAACCAG 51.5% identity Open · Scan
M07590_2.00 NN 70-40% CisBP TTTTTTTCTTTTATTTTTTTTTTTTTTTTTTTT 51.4% identity Open · Scan
M07700_2.00 NN 70-40% CisBP ATGTTGTGAGGAAGCCCA 51.4% identity Open · Scan
M08944_2.00 NN 70-40% CisBP TACCATGCTGTTTTGATTAC 51.3% identity Open · Scan
M01181_2.00 NN 70-40% CisBP GCGCATCCCC 51.2% identity Open · Scan
M08255_2.00 NN 70-40% CisBP CTCTTCCGGT 51.2% identity Open · Scan
M08256_2.00 NN 70-40% CisBP GTGCCTT 51.2% identity Open · Scan
M08375_2.00 NN 70-40% CisBP TTCCCCATTGGCTACTGCACCGGTCCT 51.2% identity Open · Scan
MA0095.1 NN 70-40% JASPAR GCCATC 51.1% identity Open · Scan
M07678_2.00 NN 70-40% CisBP CCCGCCCCCTCCTCCCCCTTCCCACCC 50.9% identity Open · Scan
M07727_2.00 NN 70-40% CisBP CGCCGCCTCCCC 50.9% identity Open · Scan
M08347_2.00 NN 70-40% CisBP GCCCTGGGCAGC 50.9% identity Open · Scan
MA1596.1 NN 70-40% JASPAR GCCTCAGCCTCCCGAG 50.9% identity Open · Scan
M05853_2.00 NN 70-40% CisBP CCACCTTTAGCCATATCT 50.6% identity Open · Scan
MA1597.1 NN 70-40% JASPAR CCCAGGGAAGCCATTTC 50.6% identity Open · Scan
M08252_2.00 NN 70-40% CisBP CCGGCTCCAGCACCC 50.1% identity Open · Scan
ModCRE6
MotifPredictionSourceDNA bindingSupportLogoActions
DIMER_tr_B4DMT1_B4DMT1_HUMAN:100:151_1llm_D_1 ModCRE Homology model ACCGCGGCGGGT Region 100-151 · 1 3D model Open · Scan
TFS_tr_B4DMT1_B4DMT1_HUMAN:2:264_5v3j_E_1 ModCRE Homology model TTTTCGGGGGGGCCCGGGGGGGGGCC Region 2-264 · 1 3D model Open · Scan
TFS_tr_B4DMT1_B4DMT1_HUMAN:2:264_5v3m_C_1 ModCRE Homology model TTGCCCGGGGGCGGGGGTGGGGAGCC Region 2-264 · 1 3D model Open · Scan
TFS_tr_B4DMT1_B4DMT1_HUMAN:2:264_5wjq_D_1 ModCRE Homology model TGGGGGGGGGTGAGGTCGGGCTGGGCCT Region 2-264 · 1 3D model Open · Scan
TFS_tr_B4DMT1_B4DMT1_HUMAN:71:181_5ei9_E_1 ModCRE Homology model CCCCGGGGCCGGGGGCC Region 71-181 · 1 3D model Open · Scan
TFS_tr_B4DMT1_B4DMT1_HUMAN:83:236_2i13_A_1 ModCRE Homology model CTAACTTAGGTTACTGTATTT Region 83-236 · 1 3D model Open · Scan

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 270 aa
2-264

Region 2-264 6 PWM

Residues
263 aa
Domains
PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type
3D models
6 active PDBs · 6 summary rows
Templates
1LLM, 2I13, 5EI9, 5V3J, 5V3M, 5WJQ
Sources
Predicted = Low
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
6 active PDB models 6 summary rows
Region 2-2646 models · 6 summary rows
Actions
Predicted = Low DIMER_tr_B4DMT1_B4DMT1_HUMAN:100:151_1llm_D_1 1llm 100-151 View model · PDB
Predicted = Low TFS_tr_B4DMT1_B4DMT1_HUMAN:2:264_5v3j_E_1 5v3j 2-264 View model · PDB
Predicted = Low TFS_tr_B4DMT1_B4DMT1_HUMAN:2:264_5v3m_C_1 5v3m 2-264 View model · PDB
Predicted = Low TFS_tr_B4DMT1_B4DMT1_HUMAN:2:264_5wjq_D_1 5wjq 2-264 View model · PDB
Predicted = Low TFS_tr_B4DMT1_B4DMT1_HUMAN:71:181_5ei9_E_1 5ei9 71-181 View model · PDB
Predicted = Low TFS_tr_B4DMT1_B4DMT1_HUMAN:83:236_2i13_A_1 2i13 83-236 View model · PDB

Model-summary evidence imported for this region.

RankTemplateDomainN-tailsC-tailsChainsIdentity / similarityCoverageModel file
5 5ei9 2:270 71 181 P:E · DNA:A,B 53.2% / 65.8% 100 View · PDB TFS_tr_B4DMT1_B4DMT1_HUMAN:71:181_5ei9_E_1
4 2i13 2:270 83 236 P:A · DNA:C,D 51.3% / 61.7% 100 View · PDB TFS_tr_B4DMT1_B4DMT1_HUMAN:83:236_2i13_A_1
1 1llm 2:270 100,100 151,151 P:C,D · DNA:A,B 48.1% / 63.5% 59,61 View · PDB DIMER_tr_B4DMT1_B4DMT1_HUMAN:100:151_1llm_D_1
2 5v3m 2:270 2 264 P:C · DNA:A,B 42.5% / 57.8% 94 View · PDB TFS_tr_B4DMT1_B4DMT1_HUMAN:2:264_5v3m_C_1
3 5v3j 2:270 2 264 P:E · DNA:A,B 42.5% / 57.8% 94 View · PDB TFS_tr_B4DMT1_B4DMT1_HUMAN:2:264_5v3j_E_1
1 5wjq 2:270 2 264 P:D · DNA:A,B 41.0% / 58.2% 93 View · PDB TFS_tr_B4DMT1_B4DMT1_HUMAN:2:264_5wjq_D_1

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
74-96PF00096Zinc finger, C2H2 typeoverlaps 2-264
102-124PF00096Zinc finger, C2H2 typeoverlaps 2-264
132-152PF00096Zinc finger, C2H2 typeoverlaps 2-264
159-180PF00096Zinc finger, C2H2 typeoverlaps 2-264
186-208PF00096Zinc finger, C2H2 typeoverlaps 2-264
214-236PF00096Zinc finger, C2H2 typeoverlaps 2-264
242-264PF00096Zinc finger, C2H2 typeoverlaps 2-264