ModCRE DB

Transcription factor

B4DNF7

cDNA FLJ57539, highly similar to Zinc finger protein GLI1

Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 574 aa

33 Generated PWM 1 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)5
MotifPredictionSourceDNA bindingSupportLogoActions
M01024_2.00 NN 70+% CisBP GGACCACCCA 80.4% identity Open · Scan
M03702_2.00 NN 70+% CisBP GACCCCCCACGACGC 76.2% identity Open · Scan
MA0734.1 NN 70+% JASPAR GCGACCACACTG 75.5% identity Open · Scan
MA1491.1 NN 70+% JASPAR AGACCACCCACGTCG 75.3% identity Open · Scan
M01022_2.00 NN 70+% CisBP GGACCACCCAC 72.9% identity Open · Scan
Nearest Neighbor (70% - 40%)28
MotifPredictionSourceDNA bindingSupportLogoActions
M01529_2.00 NN 70-40% CisBP CCCCGCATT 69.4% identity Open · Scan
MA0737.1 NN 70-40% JASPAR GACCCCCCACGAAG 67.7% identity Open · Scan
M08525_2.00 NN 70-40% CisBP CCCCGCA 63.1% identity Open · Scan
M06084_2.00 NN 70-40% CisBP AGACCACCCAC 62.0% identity Open · Scan
MA0735.1 NN 70-40% JASPAR AGACCCCCCACGAAGC 61.4% identity Open · Scan
M06112_2.00 NN 70-40% CisBP CTACTTTCACCGGGG 60.7% identity Open · Scan
M01442_2.00 NN 70-40% CisBP ACCCCACATT 58.9% identity Open · Scan
M02643_2.00 NN 70-40% CisBP GACCACCCACG 58.6% identity Open · Scan
M00129_2.00 NN 70-40% CisBP AGACCCCCCAC 58.1% identity Open · Scan
MA0736.1 NN 70-40% JASPAR GACCCCCCGCGAAG 58.1% identity Open · Scan
M04486_2.00 NN 70-40% CisBP GACCCCCTGCTGTGC 58.0% identity Open · Scan
M00021_2.00 NN 70-40% CisBP TACCCCACAC 57.1% identity Open · Scan
M00621_2.00 NN 70-40% CisBP CCCGCTGTGA 56.2% identity Open · Scan
M06133_2.00 NN 70-40% CisBP CAGACCCCCCGCGGA 56.2% identity Open · Scan
M08233_2.00 NN 70-40% CisBP CCCCTGCTGGG 54.4% identity Open · Scan
MA1628.1 NN 70-40% JASPAR CACAGCAGGGG 54.4% identity Open · Scan
M00780_2.00 NN 70-40% CisBP GACCCCCCGG 54.1% identity Open · Scan
MA1584.1 NN 70-40% JASPAR CGACCCCCCGCTGTGC 54.1% identity Open · Scan
M00645_2.00 NN 70-40% CisBP CGCCCACGCA 53.8% identity Open · Scan
M09013_2.00 NN 70-40% CisBP GGCCCCCTGCTGTGA 53.7% identity Open · Scan
MA0696.1 NN 70-40% JASPAR GACCCCCCGCTGTG 53.7% identity Open · Scan
MA0697.1 NN 70-40% JASPAR GACCCCCCGCTGCGC 53.7% identity Open · Scan
MA0751.1 NN 70-40% JASPAR GACCCCCCGCTGTGC 52.4% identity Open · Scan
M04409_2.00 NN 70-40% CisBP GGCGGCCATTTTGG 51.9% identity Open · Scan
M02673_2.00 NN 70-40% CisBP GAACCCCCA 50.6% identity Open · Scan
M01474_2.00 NN 70-40% CisBP CGCCGATCAC 50.0% identity Open · Scan
M08357_2.00 NN 70-40% CisBP GAGCCTGCTACTGAGCCTGGG 50.0% identity Open · Scan
MA0088.1 NN 70-40% JASPAR GATTTCCCATAATGCCTTGC 50.0% identity Open · Scan
ModCRE0

No generated PWM in this category.

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 574 aa
106-260

Region 106-260 0 PWM

Residues
155 aa
Domains
PF23561 · C2H2 zinc finger PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type
3D models
1 active PDB
Templates
2GLI
Sources
Structure model
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
1 active PDB model
Region 106-2601 model
Actions
Predicted = Low TFS_B4DNF7:106:260_2gli_A_1 2gli 106-260 View model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
142-171PF23561C2H2 zinc fingeroverlaps 106-260
173-197PF00096Zinc finger, C2H2 typeoverlaps 106-260
234-259PF00096Zinc finger, C2H2 typeoverlaps 106-260