ModCRE DB

Transcription factor

B4DNH5

cDNA FLJ59039, highly similar to Homo sapiens zinc finger protein 121 (ZNF121), mRNA

Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 343 aa

59 Generated PWM 6 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)53
MotifPredictionSourceDNA bindingSupportLogoActions
M00939_2.00 NN 70-40% CisBP CCACCTCA 67.8% identity Open · Scan
M00950_2.00 NN 70-40% CisBP GCAGCCCA 61.9% identity Open · Scan
M00955_2.00 NN 70-40% CisBP ACGTCCTCT 61.9% identity Open · Scan
M00960_2.00 NN 70-40% CisBP TGCATCCC 61.9% identity Open · Scan
M00952_2.00 NN 70-40% CisBP GGATGCTC 60.7% identity Open · Scan
M00958_2.00 NN 70-40% CisBP CGGCATCCC 60.7% identity Open · Scan
M02924_2.00 NN 70-40% CisBP AGTGTTAACAGAACACCT 60.3% identity Open · Scan
M00943_2.00 NN 70-40% CisBP CCCGCTGC 59.5% identity Open · Scan
M00948_2.00 NN 70-40% CisBP GCAGCACC 59.5% identity Open · Scan
M00953_2.00 NN 70-40% CisBP ATCTATAT 59.5% identity Open · Scan
M00959_2.00 NN 70-40% CisBP GCCCTCCC 59.5% identity Open · Scan
M04650_2.00 NN 70-40% CisBP GCATAACTGCCCCGCTGCC 59.1% identity Open · Scan
M00944_2.00 NN 70-40% CisBP TCGCTATAA 58.3% identity Open · Scan
M08335_2.00 NN 70-40% CisBP AGTCGTTGTCTG 58.3% identity Open · Scan
MA1124.1 NN 70-40% JASPAR CATTCATTCATTC 57.8% identity Open · Scan
M04611_2.00 NN 70-40% CisBP CTTTCGGACAC 57.4% identity Open · Scan
M07689_2.00 NN 70-40% CisBP ACCCAGGCTCCTTCCATCTTGTGGCTC 56.6% identity Open · Scan
M04613_2.00 NN 70-40% CisBP CTCATGTGCTAATTACAAA 56.5% identity Open · Scan
M08985_2.00 NN 70-40% CisBP TGAGGACCTACTGTGTGCC 55.5% identity Open · Scan
M07578_2.00 NN 70-40% CisBP CAACTCTCC 55.4% identity Open · Scan
M08254_2.00 NN 70-40% CisBP CTGCCCTGGGACTTT 55.4% identity Open · Scan
M07707_2.00 NN 70-40% CisBP TCCCGC 55.1% identity Open · Scan
M08309_2.00 NN 70-40% CisBP AAAAACCCCCCTGCAGAGCCCAGCCCT 54.9% identity Open · Scan
M00945_2.00 NN 70-40% CisBP CACCGCAC 54.6% identity Open · Scan
M00134_2.00 NN 70-40% CisBP GCCACGCCCA 54.2% identity Open · Scan
M04387_2.00 NN 70-40% CisBP CGTGCTCCCC 53.1% identity Open · Scan
M07700_2.00 NN 70-40% CisBP ATGTTGTGAGGAAGCCCA 53.1% identity Open · Scan
M04598_2.00 NN 70-40% CisBP CGCTAACTCTCCACA 53.0% identity Open · Scan
M04475_2.00 NN 70-40% CisBP GATGCACGTACCGTGCCTCA 52.9% identity Open · Scan
M04465_2.00 NN 70-40% CisBP GTGATTCTTATCTTATCCTT 52.5% identity Open · Scan
M06108_2.00 NN 70-40% CisBP ACAACAACAAC 52.5% identity Open · Scan
M07567_2.00 NN 70-40% CisBP CCACTCCACTCA 52.3% identity Open · Scan
M07648_2.00 NN 70-40% CisBP GCTTGCAAAAAAAATTTAACTCCCAGCTC 52.3% identity Open · Scan
M08255_2.00 NN 70-40% CisBP CTCTTCCGGT 52.3% identity Open · Scan
M08334_2.00 NN 70-40% CisBP TTTGTTTTTTTCTGATTGCTTTTTACTTAT 52.3% identity Open · Scan
M08934_2.00 NN 70-40% CisBP GCTGTACCTGCTTATTAGGC 52.1% identity Open · Scan
M04621_2.00 NN 70-40% CisBP AGCAATTCCGCTCA 52.0% identity Open · Scan
MA1589.1 NN 70-40% JASPAR TAGGAGTGGAATTGCTGGGTC 52.0% identity Open · Scan
MA1602.1 NN 70-40% JASPAR CGTCTACACGGG 51.5% identity Open · Scan
M00782_2.00 NN 70-40% CisBP AGTGTGCGCTA 50.7% identity Open · Scan
M08283_2.00 NN 70-40% CisBP GACTTTTATTTT 50.7% identity Open · Scan
M08355_2.00 NN 70-40% CisBP GCGAACTCCTATTCATCC 50.7% identity Open · Scan
M08325_2.00 NN 70-40% CisBP TTTTTTTTT 50.3% identity Open · Scan
MA1154.1 NN 70-40% JASPAR CTTTCCCACAACACGAC 50.3% identity Open · Scan
M08247_2.00 NN 70-40% CisBP AAAAATAACAAACGG 50.1% identity Open · Scan
MA1594.1 NN 70-40% JASPAR AGGGGACATCACTACAGATCCCAC 50.1% identity Open · Scan
M00224_2.00 NN 70-40% CisBP CCCGCCCC 50.0% identity Open · Scan
M04463_2.00 NN 70-40% CisBP CACCACGCCCA 50.0% identity Open · Scan
M04590_2.00 NN 70-40% CisBP TGCGCTAACCATTGC 50.0% identity Open · Scan
M07635_2.00 NN 70-40% CisBP AAGTTTTCTTGTATTATATCT 50.0% identity Open · Scan
MA0039.1 NN 70-40% JASPAR TAAAGGAAGG 50.0% identity Open · Scan
MA0039.3 NN 70-40% JASPAR CCACACCCTGC 50.0% identity Open · Scan
MA1515.1 NN 70-40% JASPAR CACCACGCCCA 50.0% identity Open · Scan
ModCRE6
MotifPredictionSourceDNA bindingSupportLogoActions
DIMER_tr_B4DNH5_B4DNH5_HUMAN:170:218_1llm_D_1 ModCRE Homology model ATTGCGGCGGGA Region 170-218 · 1 3D model Open · Scan
TFS_tr_B4DNH5_B4DNH5_HUMAN:141:251_5ei9_E_1 ModCRE Homology model GGGGGAGGGGGGGGCCC Region 141-251 · 1 3D model Open · Scan
TFS_tr_B4DNH5_B4DNH5_HUMAN:181:334_2i13_A_1 ModCRE Homology model TTGCAATCTCTCTATAAAATT Region 181-334 · 1 3D model Open · Scan
TFS_tr_B4DNH5_B4DNH5_HUMAN:66:335_5v3j_E_1 ModCRE Homology model GGGCGGTGTACTACTGGGCTCCCCAG Region 66-335 · 1 3D model Open · Scan
TFS_tr_B4DNH5_B4DNH5_HUMAN:66:335_5v3m_C_1 ModCRE Homology model TGGCACTGGCCGGGGAGTTGGGCCCC Region 66-335 · 1 3D model Open · Scan
TFS_tr_B4DNH5_B4DNH5_HUMAN:66:335_5wjq_D_1 ModCRE Homology model GGGGGCAGGGTCGGGGGGGGGCGCACGC Region 66-335 · 1 3D model Open · Scan

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 343 aa
66-335

Region 66-335 6 PWM

Residues
270 aa
Domains
PF13465 · Zinc-finger double domain PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type
3D models
6 active PDBs · 6 summary rows
Templates
1LLM, 2I13, 5EI9, 5V3J, 5V3M, 5WJQ
Sources
Predicted = Low
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
6 active PDB models 6 summary rows
Region 66-3356 models · 6 summary rows
Actions
Predicted = Low DIMER_tr_B4DNH5_B4DNH5_HUMAN:170:218_1llm_D_1 1llm 170-218 View model · PDB
Predicted = Low TFS_tr_B4DNH5_B4DNH5_HUMAN:141:251_5ei9_E_1 5ei9 141-251 View model · PDB
Predicted = Low TFS_tr_B4DNH5_B4DNH5_HUMAN:181:334_2i13_A_1 2i13 181-334 View model · PDB
Predicted = Low TFS_tr_B4DNH5_B4DNH5_HUMAN:66:335_5v3j_E_1 5v3j 66-335 View model · PDB
Predicted = Low TFS_tr_B4DNH5_B4DNH5_HUMAN:66:335_5v3m_C_1 5v3m 66-335 View model · PDB
Predicted = Low TFS_tr_B4DNH5_B4DNH5_HUMAN:66:335_5wjq_D_1 5wjq 66-335 View model · PDB

Model-summary evidence imported for this region.

RankTemplateDomainN-tailsC-tailsChainsIdentity / similarityCoverageModel file
5 5ei9 66:339 141 251 P:E · DNA:A,B 57.7% / 68.5% 100 View · PDB TFS_tr_B4DNH5_B4DNH5_HUMAN:141:251_5ei9_E_1
4 2i13 66:339 181 334 P:A · DNA:C,D 53.2% / 68.8% 100 View · PDB TFS_tr_B4DNH5_B4DNH5_HUMAN:181:334_2i13_A_1
1 5wjq 66:339 66 335 P:D · DNA:A,B 47.4% / 64.0% 96 View · PDB TFS_tr_B4DNH5_B4DNH5_HUMAN:66:335_5wjq_D_1
1 1llm 66:339 170,170 218,218 P:C,D · DNA:A,B 46.9% / 63.3% 56,57 View · PDB DIMER_tr_B4DNH5_B4DNH5_HUMAN:170:218_1llm_D_1
2 5v3m 66:339 66 335 P:C · DNA:A,B 45.2% / 64.3% 97 View · PDB TFS_tr_B4DNH5_B4DNH5_HUMAN:66:335_5v3m_C_1
3 5v3j 66:339 66 335 P:E · DNA:A,B 45.2% / 64.3% 97 View · PDB TFS_tr_B4DNH5_B4DNH5_HUMAN:66:335_5v3j_E_1

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
158-182PF13465Zinc-finger double domainoverlaps 66-335
200-222PF00096Zinc finger, C2H2 typeoverlaps 66-335
228-250PF00096Zinc finger, C2H2 typeoverlaps 66-335
256-278PF00096Zinc finger, C2H2 typeoverlaps 66-335
284-306PF00096Zinc finger, C2H2 typeoverlaps 66-335
312-334PF00096Zinc finger, C2H2 typeoverlaps 66-335