ModCRE DB

Transcription factor

B4DNQ1

Nucleolar transcription factor 1 (Upstream-binding factor 1)

Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 661 aa

7 Generated PWM 9 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)0

No generated PWM in this category.

ModCRE7
MotifPredictionSourceDNA bindingSupportLogoActions
TFS_tr_B4DNQ1_B4DNQ1_HUMAN:46:106_5jgh_D_1 ModCRE Homology model TTTATTAAAAAAAAAAAAAAAAATTAAAATTT Region 46-106 · 1 3D model Open · Scan
TFS_tr_B4DNQ1_B4DNQ1_HUMAN:46:106_5jh0_A_1 ModCRE Homology model AATTTTTAAAAAAAAAAAAAAAAAAAAAAAAA Region 46-106 · 1 3D model Open · Scan
TFS_tr_B4DNQ1_B4DNQ1_HUMAN:46:106_5jh0_D_1 ModCRE Homology model TTAACCAAAAAAAAAAAAAAAATTTAAAAATT Region 46-106 · 1 3D model Open · Scan
TFS_tr_B4DNQ1_B4DNQ1_HUMAN:46:115_6erp_C_1 ModCRE Homology model GATCTAGTTTAAAAGC Region 46-115 · 1 3D model Open · Scan
TFS_tr_B4DNQ1_B4DNQ1_HUMAN:46:115_6erq_C_1 ModCRE Homology model GAAAGTATACCCAACAC Region 46-115 · 1 3D model Open · Scan
TFS_tr_B4DNQ1_B4DNQ1_HUMAN:46:115_6hc3_A_1 ModCRE Homology model CAGTTTATGTTA Region 46-115 · 1 3D model Open · Scan
TFS_tr_B4DNQ1_B4DNQ1_HUMAN:47:114_4y60_C_1 ModCRE Homology model GGGGATTTGTTCCCA Region 47-114 · 1 3D model Open · Scan

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 661 aa
46-115

Region 46-115 7 PWM

Residues
70 aa
Domains
PF00505 · HMG (high mobility group) box
3D models
9 active PDBs · 5 summary rows
Templates
4Y60, 5JGH, 5JH0, 6ERP, 6ERQ, 6HC3, 7LBX
Sources
Predicted = Low
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
9 active PDB models 5 summary rows
Region 46-1159 models · 5 summary rows
Actions
Predicted = Low TFS_tr_B4DNQ1_B4DNQ1_HUMAN:46:106_5jgh_D_1 5jgh 46-106 View model · PDB
Predicted = Low TFS_tr_B4DNQ1_B4DNQ1_HUMAN:46:106_5jh0_A_1 5jh0 46-106 View model · PDB
Predicted = Low TFS_tr_B4DNQ1_B4DNQ1_HUMAN:46:106_5jh0_D_1 5jh0 46-106 View model · PDB
Predicted = Low TFS_tr_B4DNQ1_B4DNQ1_HUMAN:46:115_6erp_C_1 6erp 46-115 View model · PDB
Predicted = Low TFS_tr_B4DNQ1_B4DNQ1_HUMAN:46:115_6erq_C_1 6erq 46-115 View model · PDB
Predicted = Low TFS_tr_B4DNQ1_B4DNQ1_HUMAN:46:115_6hc3_A_1 6hc3 46-115 View model · PDB
Predicted = Low TFS_tr_B4DNQ1_B4DNQ1_HUMAN:46:115_7lbx_A_1 7lbx 46-115 View model · PDB
Predicted = Low TFS_tr_B4DNQ1_B4DNQ1_HUMAN:46:115_7lbx_B_1 7lbx 46-115 View model · PDB
Predicted = Low TFS_tr_B4DNQ1_B4DNQ1_HUMAN:47:114_4y60_C_1 4y60 47-114 View model · PDB

Model-summary evidence imported for this region.

RankTemplateDomainN-tailsC-tailsChainsIdentity / similarityCoverageModel file
1 6erq 46:115 46 115 P:C · DNA:D,E 30.0% / 61.4% 36 View · PDB TFS_tr_B4DNQ1_B4DNQ1_HUMAN:46:115_6erq_C_1
2 6erp 46:115 46 115 P:C · DNA:D,E 30.0% / 61.4% 36 View · PDB TFS_tr_B4DNQ1_B4DNQ1_HUMAN:46:115_6erp_C_1
3 7lbx 46:115 46 115 P:B · DNA:C,D,E,F 30.0% / 61.4% 37 View · PDB TFS_tr_B4DNQ1_B4DNQ1_HUMAN:46:115_7lbx_B_1
4 6hc3 46:115 46 115 P:A · DNA:B,C 30.0% / 61.4% 36 View · PDB TFS_tr_B4DNQ1_B4DNQ1_HUMAN:46:115_6hc3_A_1
5 7lbx 46:115 46 115 P:A · DNA:C,D,E,F 30.0% / 61.4% 36 View · PDB TFS_tr_B4DNQ1_B4DNQ1_HUMAN:46:115_7lbx_A_1

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
46-113PF00505HMG (high mobility group) boxoverlaps 46-115
196-254PF09011HMG-box domainNo overlap with loaded model regions
304-365PF00505HMG (high mobility group) boxNo overlap with loaded model regions
376-460PF14887HMG (high mobility group) box 5No overlap with loaded model regions