ModCRE DB

Transcription factor

B4DNQ8

Zinc finger protein 672

Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 296 aa

52 Generated PWM 6 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)46
MotifPredictionSourceDNA bindingSupportLogoActions
M00943_2.00 NN 70-40% CisBP CCCGCTGC 63.5% identity Open · Scan
M00960_2.00 NN 70-40% CisBP TGCATCCC 63.5% identity Open · Scan
M00950_2.00 NN 70-40% CisBP GCAGCCCA 62.3% identity Open · Scan
M00953_2.00 NN 70-40% CisBP ATCTATAT 62.3% identity Open · Scan
M00959_2.00 NN 70-40% CisBP GCCCTCCC 62.3% identity Open · Scan
M00944_2.00 NN 70-40% CisBP TCGCTATAA 61.1% identity Open · Scan
M00948_2.00 NN 70-40% CisBP GCAGCACC 61.1% identity Open · Scan
M00952_2.00 NN 70-40% CisBP GGATGCTC 61.1% identity Open · Scan
M00958_2.00 NN 70-40% CisBP CGGCATCCC 60.0% identity Open · Scan
M00939_2.00 NN 70-40% CisBP CCACCTCA 58.8% identity Open · Scan
M04475_2.00 NN 70-40% CisBP GATGCACGTACCGTGCCTCA 57.3% identity Open · Scan
M00955_2.00 NN 70-40% CisBP ACGTCCTCT 55.2% identity Open · Scan
M08373_2.00 NN 70-40% CisBP CCCCCTGGCTCTTCCTCT 54.9% identity Open · Scan
M07683_2.00 NN 70-40% CisBP GTGGGAAAGCCT 54.4% identity Open · Scan
MA1601.1 NN 70-40% JASPAR ATGTGGGAAA 54.4% identity Open · Scan
M07578_2.00 NN 70-40% CisBP CAACTCTCC 54.3% identity Open · Scan
M04387_2.00 NN 70-40% CisBP CGTGCTCCCC 54.2% identity Open · Scan
M07562_2.00 NN 70-40% CisBP GAAAAAAAC 54.1% identity Open · Scan
M02924_2.00 NN 70-40% CisBP AGTGTTAACAGAACACCT 53.9% identity Open · Scan
M04611_2.00 NN 70-40% CisBP CTTTCGGACAC 53.5% identity Open · Scan
M08325_2.00 NN 70-40% CisBP TTTTTTTTT 53.5% identity Open · Scan
M07762_2.00 NN 70-40% CisBP GCCGCGCACAGGCTTCTAGCC 53.1% identity Open · Scan
M01181_2.00 NN 70-40% CisBP GCGCATCCCC 52.7% identity Open · Scan
M01457_2.00 NN 70-40% CisBP GCGCACGGAC 52.7% identity Open · Scan
M04505_2.00 NN 70-40% CisBP AGCTTTTCCCACAC 52.7% identity Open · Scan
M08267_2.00 NN 70-40% CisBP CAGTTTCATTTTCC 52.7% identity Open · Scan
M04650_2.00 NN 70-40% CisBP GCATAACTGCCCCGCTGCC 52.5% identity Open · Scan
M04590_2.00 NN 70-40% CisBP TGCGCTAACCATTGC 52.3% identity Open · Scan
M00945_2.00 NN 70-40% CisBP CACCGCAC 51.7% identity Open · Scan
M03671_2.00 NN 70-40% CisBP ATTACCATACAAGTGCAC 51.7% identity Open · Scan
M08985_2.00 NN 70-40% CisBP TGAGGACCTACTGTGTGCC 51.7% identity Open · Scan
M08901_2.00 NN 70-40% CisBP CCAGTTCACACC 51.4% identity Open · Scan
M04613_2.00 NN 70-40% CisBP CTCATGTGCTAATTACAAA 51.3% identity Open · Scan
MA1602.1 NN 70-40% JASPAR CGTCTACACGGG 51.2% identity Open · Scan
M00031_2.00 NN 70-40% CisBP TACCCCGCAC 50.9% identity Open · Scan
MA0599.1 NN 70-40% JASPAR GCCCCGCCCC 50.6% identity Open · Scan
M04598_2.00 NN 70-40% CisBP CGCTAACTCTCCACA 50.4% identity Open · Scan
M04465_2.00 NN 70-40% CisBP GTGATTCTTATCTTATCCTT 50.3% identity Open · Scan
M07610_2.00 NN 70-40% CisBP CCTTCTTCCTCCCCCCTGCCCACC 50.1% identity Open · Scan
M07753_2.00 NN 70-40% CisBP TGCATTCCTTGGCTTGTG 50.1% identity Open · Scan
M00609_2.00 NN 70-40% CisBP GGAAGCCCTA 50.0% identity Open · Scan
M01537_2.00 NN 70-40% CisBP TACCCCGCAC 50.0% identity Open · Scan
M07777_2.00 NN 70-40% CisBP GCCAATTTCCGTGGTGTAAAT 50.0% identity Open · Scan
M08860_2.00 NN 70-40% CisBP TCTTATAAGGGCACTAATCCCATT 50.0% identity Open · Scan
MA0753.1 NN 70-40% JASPAR CCCCCCCCAC 50.0% identity Open · Scan
MA1587.1 NN 70-40% JASPAR CCTCGACCTCCTGA 50.0% identity Open · Scan
ModCRE6
MotifPredictionSourceDNA bindingSupportLogoActions
DIMER_tr_B4DNQ8_B4DNQ8_HUMAN:69:118_1llm_D_1 ModCRE Homology model TACCCCCCGGGA Region 69-118 · 1 3D model Open · Scan
TFS_tr_B4DNQ8_B4DNQ8_HUMAN:52:205_2i13_A_1 ModCRE Homology model CTTTAAGCACTAACACGTAAA Region 52-205 · 1 3D model Open · Scan
TFS_tr_B4DNQ8_B4DNQ8_HUMAN:68:178_5ei9_E_1 ModCRE Homology model GGGTCGGGGGGGGGCCC Region 68-178 · 1 3D model Open · Scan
TFS_tr_B4DNQ8_B4DNQ8_HUMAN:6:262_5v3j_E_1 ModCRE Homology model GGCCCGGGCACGGGCGCCCCCTGGGG Region 6-262 · 1 3D model Open · Scan
TFS_tr_B4DNQ8_B4DNQ8_HUMAN:6:262_5v3m_C_1 ModCRE Homology model ACCCGGGGGGGGGAGCCCCGGGGGCG Region 6-262 · 1 3D model Open · Scan
TFS_tr_B4DNQ8_B4DNQ8_HUMAN:6:262_5wjq_D_1 ModCRE Homology model AAGCGACCGGGGGGGGCCCGGGGGCGG Region 6-262 · 1 3D model Open · Scan

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 296 aa
6-262

Region 6-262 6 PWM

Residues
257 aa
Domains
PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF13894 · C2H2-type zinc finger PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type
3D models
6 active PDBs · 6 summary rows
Templates
1LLM, 2I13, 5EI9, 5V3J, 5V3M, 5WJQ
Sources
Predicted = Low
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
6 active PDB models 6 summary rows
Region 6-2626 models · 6 summary rows
Actions
Predicted = Low DIMER_tr_B4DNQ8_B4DNQ8_HUMAN:69:118_1llm_D_1 1llm 69-118 View model · PDB
Predicted = Low TFS_tr_B4DNQ8_B4DNQ8_HUMAN:52:205_2i13_A_1 2i13 52-205 View model · PDB
Predicted = Low TFS_tr_B4DNQ8_B4DNQ8_HUMAN:68:178_5ei9_E_1 5ei9 68-178 View model · PDB
Predicted = Low TFS_tr_B4DNQ8_B4DNQ8_HUMAN:6:262_5v3j_E_1 5v3j 6-262 View model · PDB
Predicted = Low TFS_tr_B4DNQ8_B4DNQ8_HUMAN:6:262_5v3m_C_1 5v3m 6-262 View model · PDB
Predicted = Low TFS_tr_B4DNQ8_B4DNQ8_HUMAN:6:262_5wjq_D_1 5wjq 6-262 View model · PDB

Model-summary evidence imported for this region.

RankTemplateDomainN-tailsC-tailsChainsIdentity / similarityCoverageModel file
5 5ei9 6:277 68 178 P:E · DNA:A,B 60.4% / 77.5% 100 View · PDB TFS_tr_B4DNQ8_B4DNQ8_HUMAN:68:178_5ei9_E_1
4 2i13 6:277 52 205 P:A · DNA:C,D 55.8% / 69.5% 100 View · PDB TFS_tr_B4DNQ8_B4DNQ8_HUMAN:52:205_2i13_A_1
1 1llm 6:277 69,69 118,118 P:C,D · DNA:A,B 54.0% / 62.0% 57,58 View · PDB DIMER_tr_B4DNQ8_B4DNQ8_HUMAN:69:118_1llm_D_1
1 5v3m 6:277 6 262 P:C · DNA:A,B 46.3% / 60.7% 89 View · PDB TFS_tr_B4DNQ8_B4DNQ8_HUMAN:6:262_5v3m_C_1
2 5v3j 6:277 6 262 P:E · DNA:A,B 46.3% / 60.7% 89 View · PDB TFS_tr_B4DNQ8_B4DNQ8_HUMAN:6:262_5v3j_E_1
3 5wjq 6:277 6 262 P:D · DNA:A,B 45.9% / 60.3% 88 View · PDB TFS_tr_B4DNQ8_B4DNQ8_HUMAN:6:262_5wjq_D_1

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
7-29PF00096Zinc finger, C2H2 typeoverlaps 6-262
43-65PF00096Zinc finger, C2H2 typeoverlaps 6-262
71-93PF00096Zinc finger, C2H2 typeoverlaps 6-262
99-121PF00096Zinc finger, C2H2 typeoverlaps 6-262
127-149PF00096Zinc finger, C2H2 typeoverlaps 6-262
155-177PF00096Zinc finger, C2H2 typeoverlaps 6-262
183-205PF13894C2H2-type zinc fingeroverlaps 6-262
211-233PF00096Zinc finger, C2H2 typeoverlaps 6-262
240-261PF00096Zinc finger, C2H2 typeoverlaps 6-262