ModCRE DB

Transcription factor

B4DPN4

cDNA FLJ56500, highly similar to Hepatocyte nuclear factor 1-alpha

Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 452 aa

5 Generated PWM 1 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)4
MotifPredictionSourceDNA bindingSupportLogoActions
M09144_2.00 NN 70+% CisBP GGTTAATGATTAACT 99.7% identity Open · Scan
MA0046.1 NN 70+% JASPAR GGTTAATAATTAAC 99.7% identity Open · Scan
M00171_2.00 NN 70+% CisBP TTAACTAG 95.6% identity Open · Scan
M00408_2.00 NN 70+% CisBP TTAACCAG 82.3% identity Open · Scan
Nearest Neighbor (70% - 40%)1
MotifPredictionSourceDNA bindingSupportLogoActions
MA0153.1 NN 70-40% JASPAR TTAATATTTAAC 56.0% identity Open · Scan
ModCRE0

No generated PWM in this category.

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 452 aa
198-240

Region 198-240 0 PWM

Residues
43 aa
Domains
No overlapping PFAM annotation recorded
3D models
1 active PDB
Templates
1FJL
Sources
Structure model
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
1 active PDB model
Region 198-2401 model
Actions
Predicted = Low DIMER_B4DPN4:198:240_1fjl_A_1 1fjl 198-240 View model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
8-168PF04814Hepatocyte nuclear factor 1 (HNF-1), N terminusNo overlap with loaded model regions
282-434PF04812Hepatocyte nuclear factor 1 (HNF-1), beta isoform C terminusNo overlap with loaded model regions