Region 53-377 3 PWM
- Residues
- 325 aa
- Domains
- PF02536 · mTERF
- 3D models
- 3 active PDBs · 3 summary rows
- Templates
- 3MVA, 3N7Q, 5CO0
- Sources
- Predicted = Low
Transcription factor
B4DPR9
Transcription termination factor 1, mitochondrial (Mitochondrial transcription termination factor 1)
Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 379 aa
Motif Prediction
Only entries with a generated matrix are shown here.
Known0
No generated PWM in this category.
Nearest Neighbor (>70%)0
No generated PWM in this category.
Nearest Neighbor (70% - 40%)0
No generated PWM in this category.
ModCRE3
| Motif | Prediction | Source | DNA binding | Support | Logo | Actions |
|---|---|---|---|---|---|---|
| TFS_tr_B4DPR9_B4DPR9_HUMAN:53:376_3mva_O_1 | ModCRE | Homology model | TGCCACACTT | Region 53-376 · 1 3D model | Open · Scan | |
| TFS_tr_B4DPR9_B4DPR9_HUMAN:53:376_5co0_O_1 | ModCRE | Homology model | TGAAACACAA | Region 53-376 · 1 3D model | Open · Scan | |
| TFS_tr_B4DPR9_B4DPR9_HUMAN:80:377_3n7q_A_1 | ModCRE | Homology model | TTAGTGGTG | Region 80-377 · 1 3D model | Open · Scan |
Model-supported DNA-binding regions
Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.
1
379 aa
53-377
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
3 active PDB models
3 summary rows
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
Region 53-3773 models · 3 summary rows
| Actions | ||||
|---|---|---|---|---|
| Predicted = Low | TFS_tr_B4DPR9_B4DPR9_HUMAN:53:376_3mva_O_1 | 3mva | 53-376 | View model · PDB |
| Predicted = Low | TFS_tr_B4DPR9_B4DPR9_HUMAN:53:376_5co0_O_1 | 5co0 | 53-376 | View model · PDB |
| Predicted = Low | TFS_tr_B4DPR9_B4DPR9_HUMAN:80:377_3n7q_A_1 | 3n7q | 80-377 | View model · PDB |
Model-summary evidence imported for this region.
| Rank | Template | Domain | N-tails | C-tails | Chains | Identity / similarity | Coverage | Model file |
|---|---|---|---|---|---|---|---|---|
| 1 | 3mva | 53:377 | 53 | 376 | P:O · DNA:D,E | 100.0% / 100.0% | 100 | View · PDB TFS_tr_B4DPR9_B4DPR9_HUMAN:53:376_3mva_O_1 |
| 3 | 3n7q | 53:377 | 80 | 377 | P:A · DNA:B,C | 100.0% / 100.0% | 100 | View · PDB TFS_tr_B4DPR9_B4DPR9_HUMAN:80:377_3n7q_A_1 |
| 2 | 5co0 | 53:377 | 53 | 376 | P:O · DNA:D,E | 99.7% / 99.7% | 100 | View · PDB TFS_tr_B4DPR9_B4DPR9_HUMAN:53:376_5co0_O_1 |
View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.
Domains
Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.
| Residues | PFAM | Domain | Used by prediction region? |
|---|---|---|---|
| 56-369 | PF02536 | mTERF | overlaps 53-377 |