ModCRE DB

Transcription factor

B4DPY9

cDNA FLJ56395, highly similar to Zinc finger protein 567

Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 591 aa

73 Generated PWM 1 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)1
MotifPredictionSourceDNA bindingSupportLogoActions
M00953_2.00 NN 70+% CisBP ATCTATAT 70.5% identity Open · Scan
Nearest Neighbor (70% - 40%)72
MotifPredictionSourceDNA bindingSupportLogoActions
M00939_2.00 NN 70-40% CisBP CCACCTCA 66.6% identity Open · Scan
M00944_2.00 NN 70-40% CisBP TCGCTATAA 65.8% identity Open · Scan
M00959_2.00 NN 70-40% CisBP GCCCTCCC 65.8% identity Open · Scan
M00943_2.00 NN 70-40% CisBP CCCGCTGC 64.7% identity Open · Scan
M00950_2.00 NN 70-40% CisBP GCAGCCCA 64.7% identity Open · Scan
M00960_2.00 NN 70-40% CisBP TGCATCCC 64.7% identity Open · Scan
M00948_2.00 NN 70-40% CisBP GCAGCACC 63.5% identity Open · Scan
M00952_2.00 NN 70-40% CisBP GGATGCTC 63.5% identity Open · Scan
M00958_2.00 NN 70-40% CisBP CGGCATCCC 63.5% identity Open · Scan
M00955_2.00 NN 70-40% CisBP ACGTCCTCT 62.3% identity Open · Scan
M02924_2.00 NN 70-40% CisBP AGTGTTAACAGAACACCT 60.6% identity Open · Scan
MA1124.1 NN 70-40% JASPAR CATTCATTCATTC 59.5% identity Open · Scan
M04613_2.00 NN 70-40% CisBP CTCATGTGCTAATTACAAA 59.4% identity Open · Scan
M08887_2.00 NN 70-40% CisBP CCTCCTCCAGGAAGCCTTCCCTGA 58.9% identity Open · Scan
M04536_2.00 NN 70-40% CisBP ACGTAACCCGATACC 58.8% identity Open · Scan
MA1594.1 NN 70-40% JASPAR AGGGGACATCACTACAGATCCCAC 58.4% identity Open · Scan
M00786_2.00 NN 70-40% CisBP TATATATAT 58.3% identity Open · Scan
M07666_2.00 NN 70-40% CisBP ATCTAGCCCCTGCCTACC 57.7% identity Open · Scan
M08329_2.00 NN 70-40% CisBP GCTGCATAGTATTCC 57.4% identity Open · Scan
M04650_2.00 NN 70-40% CisBP GCATAACTGCCCCGCTGCC 57.2% identity Open · Scan
M07613_2.00 NN 70-40% CisBP TCACTCAGTCATTCA 56.8% identity Open · Scan
M07633_2.00 NN 70-40% CisBP CTCTCGTTGTGCCTTTGCCAT 56.7% identity Open · Scan
M00782_2.00 NN 70-40% CisBP AGTGTGCGCTA 56.6% identity Open · Scan
M08325_2.00 NN 70-40% CisBP TTTTTTTTT 56.6% identity Open · Scan
M04465_2.00 NN 70-40% CisBP GTGATTCTTATCTTATCCTT 56.4% identity Open · Scan
M08392_2.00 NN 70-40% CisBP CTTCACCTGCTGAGG 56.4% identity Open · Scan
M08355_2.00 NN 70-40% CisBP GCGAACTCCTATTCATCC 56.3% identity Open · Scan
M04621_2.00 NN 70-40% CisBP AGCAATTCCGCTCA 56.2% identity Open · Scan
M08247_2.00 NN 70-40% CisBP AAAAATAACAAACGG 56.2% identity Open · Scan
M08254_2.00 NN 70-40% CisBP CTGCCCTGGGACTTT 56.0% identity Open · Scan
M07578_2.00 NN 70-40% CisBP CAACTCTCC 55.8% identity Open · Scan
M08267_2.00 NN 70-40% CisBP CAGTTTCATTTTCC 55.5% identity Open · Scan
M04387_2.00 NN 70-40% CisBP CGTGCTCCCC 55.3% identity Open · Scan
M00945_2.00 NN 70-40% CisBP CACCGCAC 55.1% identity Open · Scan
M07746_2.00 NN 70-40% CisBP CAGCTGGCGCCCAACATGGGTCCC 55.1% identity Open · Scan
M08985_2.00 NN 70-40% CisBP TGAGGACCTACTGTGTGCC 55.1% identity Open · Scan
M07610_2.00 NN 70-40% CisBP CCTTCTTCCTCCCCCCTGCCCACC 54.9% identity Open · Scan
M07667_2.00 NN 70-40% CisBP CCGCACAGGCCCCCGGGCCCC 54.9% identity Open · Scan
M08311_2.00 NN 70-40% CisBP CTGGAACAGAAGGGGCGA 54.5% identity Open · Scan
M08234_2.00 NN 70-40% CisBP GTCAACTTGACTGGGCCA 54.4% identity Open · Scan
M07620_2.00 NN 70-40% CisBP TTGGATCTGTGGATTCATGTCTTTCAT 54.2% identity Open · Scan
M07649_2.00 NN 70-40% CisBP CCCCCCCCCCCCTCAGGAATGCC 54.1% identity Open · Scan
M08334_2.00 NN 70-40% CisBP TTTGTTTTTTTCTGATTGCTTTTTACTTAT 54.1% identity Open · Scan
MA1602.1 NN 70-40% JASPAR CGTCTACACGGG 54.0% identity Open · Scan
M04598_2.00 NN 70-40% CisBP CGCTAACTCTCCACA 53.9% identity Open · Scan
M08859_2.00 NN 70-40% CisBP CATTTTTTCCTCCTAGGCCT 53.7% identity Open · Scan
M04611_2.00 NN 70-40% CisBP CTTTCGGACAC 53.4% identity Open · Scan
MA1154.1 NN 70-40% JASPAR CTTTCCCACAACACGAC 53.2% identity Open · Scan
M08373_2.00 NN 70-40% CisBP CCCCCTGGCTCTTCCTCT 53.1% identity Open · Scan
M08901_2.00 NN 70-40% CisBP CCAGTTCACACC 53.0% identity Open · Scan
M08375_2.00 NN 70-40% CisBP TTCCCCATTGGCTACTGCACCGGTCCT 52.9% identity Open · Scan
M07581_2.00 NN 70-40% CisBP TCCCCTGTGCTTCTCTCCCCT 52.8% identity Open · Scan
M08314_2.00 NN 70-40% CisBP ATTCATCAAGGTCCTCAACAATGG 52.7% identity Open · Scan
M08395_2.00 NN 70-40% CisBP GCTGCCTACTCTTCC 52.7% identity Open · Scan
M07683_2.00 NN 70-40% CisBP GTGGGAAAGCCT 52.5% identity Open · Scan
MA1601.1 NN 70-40% JASPAR ATGTGGGAAA 52.5% identity Open · Scan
M07678_2.00 NN 70-40% CisBP CCCGCCCCCTCCTCCCCCTTCCCACCC 52.0% identity Open · Scan
M07582_2.00 NN 70-40% CisBP TCCCTG 51.8% identity Open · Scan
M07648_2.00 NN 70-40% CisBP GCTTGCAAAAAAAATTTAACTCCCAGCTC 51.8% identity Open · Scan
M07753_2.00 NN 70-40% CisBP TGCATTCCTTGGCTTGTG 51.8% identity Open · Scan
M00142_2.00 NN 70-40% CisBP GTGCTCCT 51.2% identity Open · Scan
M08908_2.00 NN 70-40% CisBP GCTGCTGCTTCTGCTG 51.2% identity Open · Scan
M07656_2.00 NN 70-40% CisBP TGTCTAGTAAGTCTA 51.1% identity Open · Scan
M00764_2.00 NN 70-40% CisBP GTCTACAC 51.0% identity Open · Scan
M07777_2.00 NN 70-40% CisBP GCCAATTTCCGTGGTGTAAAT 51.0% identity Open · Scan
M01470_2.00 NN 70-40% CisBP CCCCCCGC 50.9% identity Open · Scan
M03671_2.00 NN 70-40% CisBP ATTACCATACAAGTGCAC 50.8% identity Open · Scan
M07660_2.00 NN 70-40% CisBP CCGCGCCTACCTGAGGGCGCGGGCCTGGGG 50.7% identity Open · Scan
M08283_2.00 NN 70-40% CisBP GACTTTTATTTT 50.5% identity Open · Scan
M07684_2.00 NN 70-40% CisBP CCTGTTCTTGACTTT 50.1% identity Open · Scan
M07627_2.00 NN 70-40% CisBP CAGTCACCTTCTGG 50.0% identity Open · Scan
M10303_2.00 NN 70-40% CisBP TACTGGGAATACC 50.0% identity Open · Scan
ModCRE0

No generated PWM in this category.

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 591 aa
250-528

Region 250-528 0 PWM

Residues
279 aa
Domains
PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type
3D models
1 active PDB
Templates
5WJQ
Sources
Structure model
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
1 active PDB model
Region 250-5281 model
Actions
Predicted = Low TFS_B4DPY9:250:528_5wjq_D_1 5wjq 250-528 View model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
5-46PF01352KRAB boxNo overlap with loaded model regions
253-275PF00096Zinc finger, C2H2 typeoverlaps 250-528
281-303PF00096Zinc finger, C2H2 typeoverlaps 250-528
309-331PF00096Zinc finger, C2H2 typeoverlaps 250-528
337-359PF00096Zinc finger, C2H2 typeoverlaps 250-528
365-387PF00096Zinc finger, C2H2 typeoverlaps 250-528
393-415PF00096Zinc finger, C2H2 typeoverlaps 250-528
421-443PF00096Zinc finger, C2H2 typeoverlaps 250-528
449-471PF00096Zinc finger, C2H2 typeoverlaps 250-528
477-499PF00096Zinc finger, C2H2 typeoverlaps 250-528
505-527PF00096Zinc finger, C2H2 typeoverlaps 250-528
533-555PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
561-583PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions