ModCRE DB

Transcription factor

B4DQE4

Nuclear receptor subfamily 2 group F member 6 (V-erbA-related protein 2)

Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 377 aa

42 Generated PWM 1 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)4
MotifPredictionSourceDNA bindingSupportLogoActions
MA1539.1 NN 70+% JASPAR AAGGTCACTGACCTT 93.3% identity Open · Scan
MA0677.1 NN 70+% JASPAR GAGGTCAAAGGTCA 86.1% identity Open · Scan
M00811_2.00 NN 70+% CisBP AAAGGTCAAG 85.2% identity Open · Scan
M09275_2.00 NN 70+% CisBP GGGTCACTTCAGGTCAG 70.0% identity Open · Scan
Nearest Neighbor (70% - 40%)38
MotifPredictionSourceDNA bindingSupportLogoActions
MA1111.1 NN 70-40% JASPAR CAAAGGTCAAA 68.3% identity Open · Scan
M02393_2.00 NN 70-40% CisBP AGAGGTCAC 67.2% identity Open · Scan
M00822_2.00 NN 70-40% CisBP GAGGTCAC 66.8% identity Open · Scan
M05661_2.00 NN 70-40% CisBP GGGGTCAAAGGTCAG 66.8% identity Open · Scan
MA0017.1 NN 70-40% JASPAR TGACCTTTGAACCT 66.8% identity Open · Scan
M05599_2.00 NN 70-40% CisBP AAAGGTCAA 64.9% identity Open · Scan
MA1574.1 NN 70-40% JASPAR GGGGTCAAAGGTCAT 60.2% identity Open · Scan
M05635_2.00 NN 70-40% CisBP GTGACCTCAATGAGGTCAC 58.9% identity Open · Scan
M09609_2.00 NN 70-40% CisBP CCAGGAACAG 58.0% identity Open · Scan
M00820_2.00 NN 70-40% CisBP TAGGTCACC 57.6% identity Open · Scan
MA1150.1 NN 70-40% JASPAR AATTAGGTCAC 57.6% identity Open · Scan
M03426_2.00 NN 70-40% CisBP GGGGTCAAAGTCCAAT 57.3% identity Open · Scan
M02388_2.00 NN 70-40% CisBP GAGGTCA 56.4% identity Open · Scan
M02405_2.00 NN 70-40% CisBP AGAGGTCAGT 56.4% identity Open · Scan
M05621_2.00 NN 70-40% CisBP TAGGTCATGACCTA 56.4% identity Open · Scan
M06413_2.00 NN 70-40% CisBP AAATAGGTCA 56.4% identity Open · Scan
MA0071.1 NN 70-40% JASPAR ATCAAGGTCA 56.4% identity Open · Scan
MA1151.1 NN 70-40% JASPAR ATAAGTAGGTCA 56.4% identity Open · Scan
M02392_2.00 NN 70-40% CisBP GAGGTCAA 55.5% identity Open · Scan
M05660_2.00 NN 70-40% CisBP GATGTGGGTCAGTGGGTCAG 55.4% identity Open · Scan
MA1531.1 NN 70-40% JASPAR GGGTCAGTAGGTCAG 55.4% identity Open · Scan
MA1532.1 NN 70-40% JASPAR GGGTTAGTGGGTCAT 55.4% identity Open · Scan
M06417_2.00 NN 70-40% CisBP CAGTCCGAAGGTCACCGC 53.9% identity Open · Scan
M05584_2.00 NN 70-40% CisBP AGAGGTCACGACCTCT 53.0% identity Open · Scan
M11139_2.00 NN 70-40% CisBP AAGTAGGTCACCGTGACCTACTT 53.0% identity Open · Scan
MA0065.1 NN 70-40% JASPAR CCAGGGGTCAAAGGTCATCG 53.0% identity Open · Scan
MA0065.2 NN 70-40% JASPAR GTAGGGCAAAGGTCA 53.0% identity Open · Scan
MA1550.1 NN 70-40% JASPAR AGGGGTCAAAGGTCAA 53.0% identity Open · Scan
M03928_2.00 NN 70-40% CisBP ATGTAGGTCAAG 52.7% identity Open · Scan
M01298_2.00 NN 70-40% CisBP AAAGGTCA 52.6% identity Open · Scan
MA1148.1 NN 70-40% JASPAR ATGTAGGTCAAAGGTCAT 52.2% identity Open · Scan
M09309_2.00 NN 70-40% CisBP AGGTCAGGGTGACCT 52.0% identity Open · Scan
MA0112.1 NN 70-40% JASPAR CCAGGTCACCGTGACCCC 52.0% identity Open · Scan
MA0727.1 NN 70-40% JASPAR GGGAACACAATGTTCCC 51.5% identity Open · Scan
MA1110.1 NN 70-40% JASPAR TCAATGACCTA 51.3% identity Open · Scan
M02413_2.00 NN 70-40% CisBP CGAGATCAA 50.5% identity Open · Scan
M00690_2.00 NN 70-40% CisBP AAAGATCAAA 50.0% identity Open · Scan
M03382_2.00 NN 70-40% CisBP GGGAACACAATGTTCCC 50.0% identity Open · Scan
ModCRE0

No generated PWM in this category.

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 377 aa
29-100

Region 29-100 0 PWM

Residues
72 aa
Domains
PF00105 · Double treble clef zinc finger, C4 type
3D models
1 active PDB
Templates
1YNW
Sources
Structure model
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
1 active PDB model
Region 29-1001 model
Actions
Predicted = Low DIMER_B4DQE4:29:100_1ynw_B_1 1ynw 29-100 View model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
28-96PF00105Double treble clef zinc finger, C4 typeoverlaps 29-100
170-349PF00104Ligand-binding domain of nuclear hormone receptorNo overlap with loaded model regions