Transcription factor

B4DRP8

cDNA FLJ54872, highly similar to Zinc finger protein 461

Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 540 aa

83 Generated PWM 9 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)75

Motif	Prediction	Source	DNA binding	Support	Logo	Actions
M00939_2.00	NN 70-40%	CisBP	CCACCTCA	69.4% identity		Open · Scan
M04653_2.00	NN 70-40%	CisBP	GGTACGGTTGTCCATGTTGCAA	66.1% identity		Open · Scan
M00955_2.00	NN 70-40%	CisBP	ACGTCCTCT	65.8% identity		Open · Scan
M04613_2.00	NN 70-40%	CisBP	CTCATGTGCTAATTACAAA	63.7% identity		Open · Scan
M07613_2.00	NN 70-40%	CisBP	TCACTCAGTCATTCA	63.2% identity		Open · Scan
M00952_2.00	NN 70-40%	CisBP	GGATGCTC	62.3% identity		Open · Scan
M00960_2.00	NN 70-40%	CisBP	TGCATCCC	62.3% identity		Open · Scan
M04650_2.00	NN 70-40%	CisBP	GCATAACTGCCCCGCTGCC	62.2% identity		Open · Scan
M02924_2.00	NN 70-40%	CisBP	AGTGTTAACAGAACACCT	61.7% identity		Open · Scan
MA1124.1	NN 70-40%	JASPAR	CATTCATTCATTC	61.4% identity		Open · Scan
M00944_2.00	NN 70-40%	CisBP	TCGCTATAA	61.1% identity		Open · Scan
M00948_2.00	NN 70-40%	CisBP	GCAGCACC	61.1% identity		Open · Scan
M00950_2.00	NN 70-40%	CisBP	GCAGCCCA	61.1% identity		Open · Scan
M00953_2.00	NN 70-40%	CisBP	ATCTATAT	61.1% identity		Open · Scan
M00958_2.00	NN 70-40%	CisBP	CGGCATCCC	61.1% identity		Open · Scan
M00959_2.00	NN 70-40%	CisBP	GCCCTCCC	61.1% identity		Open · Scan
M00943_2.00	NN 70-40%	CisBP	CCCGCTGC	60.0% identity		Open · Scan
M04621_2.00	NN 70-40%	CisBP	AGCAATTCCGCTCA	60.0% identity		Open · Scan
M08355_2.00	NN 70-40%	CisBP	GCGAACTCCTATTCATCC	58.9% identity		Open · Scan
M08247_2.00	NN 70-40%	CisBP	AAAAATAACAAACGG	58.8% identity		Open · Scan
M04598_2.00	NN 70-40%	CisBP	CGCTAACTCTCCACA	58.2% identity		Open · Scan
M08325_2.00	NN 70-40%	CisBP	TTTTTTTTT	58.0% identity		Open · Scan
M08375_2.00	NN 70-40%	CisBP	TTCCCCATTGGCTACTGCACCGGTCCT	57.7% identity		Open · Scan
M08267_2.00	NN 70-40%	CisBP	CAGTTTCATTTTCC	57.4% identity		Open · Scan
M07700_2.00	NN 70-40%	CisBP	ATGTTGTGAGGAAGCCCA	56.8% identity		Open · Scan
M08254_2.00	NN 70-40%	CisBP	CTGCCCTGGGACTTT	56.8% identity		Open · Scan
M00782_2.00	NN 70-40%	CisBP	AGTGTGCGCTA	56.4% identity		Open · Scan
M04465_2.00	NN 70-40%	CisBP	GTGATTCTTATCTTATCCTT	56.4% identity		Open · Scan
M08392_2.00	NN 70-40%	CisBP	CTTCACCTGCTGAGG	56.0% identity		Open · Scan
M08329_2.00	NN 70-40%	CisBP	GCTGCATAGTATTCC	55.8% identity		Open · Scan
M04611_2.00	NN 70-40%	CisBP	CTTTCGGACAC	55.1% identity		Open · Scan
M07702_2.00	NN 70-40%	CisBP	CTTCTTCCTTGG	55.1% identity		Open · Scan
M08334_2.00	NN 70-40%	CisBP	TTTGTTTTTTTCTGATTGCTTTTTACTTAT	55.1% identity		Open · Scan
M04387_2.00	NN 70-40%	CisBP	CGTGCTCCCC	54.9% identity		Open · Scan
M08274_2.00	NN 70-40%	CisBP	TTACTTGCAGCCCAACGCATTCCTAAC	54.8% identity		Open · Scan
M08887_2.00	NN 70-40%	CisBP	CCTCCTCCAGGAAGCCTTCCCTGA	54.8% identity		Open · Scan
M07648_2.00	NN 70-40%	CisBP	GCTTGCAAAAAAAATTTAACTCCCAGCTC	54.7% identity		Open · Scan
M04536_2.00	NN 70-40%	CisBP	ACGTAACCCGATACC	54.6% identity		Open · Scan
M05844_2.00	NN 70-40%	CisBP	TCACCTGT	54.6% identity		Open · Scan
M05853_2.00	NN 70-40%	CisBP	CCACCTTTAGCCATATCT	54.6% identity		Open · Scan
MA0103.1	NN 70-40%	JASPAR	CACCTG	54.6% identity		Open · Scan
MA0103.2	NN 70-40%	JASPAR	CCTCACCTG	54.6% identity		Open · Scan
M07633_2.00	NN 70-40%	CisBP	CTCTCGTTGTGCCTTTGCCAT	54.2% identity		Open · Scan
M08292_2.00	NN 70-40%	CisBP	TGTATTCCTTGTCATGTGTGG	54.2% identity		Open · Scan
M08373_2.00	NN 70-40%	CisBP	CCCCCTGGCTCTTCCTCT	54.2% identity		Open · Scan
MA1656.1	NN 70-40%	JASPAR	CCAAGCCCAACCAG	54.2% identity		Open · Scan
M00786_2.00	NN 70-40%	CisBP	TATATATAT	54.1% identity		Open · Scan
M07689_2.00	NN 70-40%	CisBP	ACCCAGGCTCCTTCCATCTTGTGGCTC	54.1% identity		Open · Scan
M00945_2.00	NN 70-40%	CisBP	CACCGCAC	54.0% identity		Open · Scan
M07600_2.00	NN 70-40%	CisBP	GCATTAGC	54.0% identity		Open · Scan
M07656_2.00	NN 70-40%	CisBP	TGTCTAGTAAGTCTA	53.9% identity		Open · Scan
M07649_2.00	NN 70-40%	CisBP	CCCCCCCCCCCCTCAGGAATGCC	53.7% identity		Open · Scan
M07581_2.00	NN 70-40%	CisBP	TCCCCTGTGCTTCTCTCCCCT	52.9% identity		Open · Scan
M07753_2.00	NN 70-40%	CisBP	TGCATTCCTTGGCTTGTG	52.4% identity		Open · Scan
M07729_2.00	NN 70-40%	CisBP	CCAGACTGCCTGCCAAAACCCCCT	52.3% identity		Open · Scan
M07578_2.00	NN 70-40%	CisBP	CAACTCTCC	52.2% identity		Open · Scan
M07658_2.00	NN 70-40%	CisBP	CCGCCGCAGCCGCCG	52.2% identity		Open · Scan
M07712_2.00	NN 70-40%	CisBP	ACATTTTTTTAATCTAAAAAAACATTTACA	51.7% identity		Open · Scan
M08395_2.00	NN 70-40%	CisBP	GCTGCCTACTCTTCC	51.7% identity		Open · Scan
M08335_2.00	NN 70-40%	CisBP	AGTCGTTGTCTG	51.6% identity		Open · Scan
M07628_2.00	NN 70-40%	CisBP	AGTGGTTCTGCTTCT	51.5% identity		Open · Scan
M07587_2.00	NN 70-40%	CisBP	CCCCCTCCCCAGTCGAGCCCCCGC	51.3% identity		Open · Scan
M07777_2.00	NN 70-40%	CisBP	GCCAATTTCCGTGGTGTAAAT	51.2% identity		Open · Scan
M00142_2.00	NN 70-40%	CisBP	GTGCTCCT	51.0% identity		Open · Scan
M01456_2.00	NN 70-40%	CisBP	GTGATCGGCG	50.9% identity		Open · Scan
M08367_2.00	NN 70-40%	CisBP	GGGGTGATGACCACTCTGGCTTCTTAC	50.9% identity		Open · Scan
M08901_2.00	NN 70-40%	CisBP	CCAGTTCACACC	50.6% identity		Open · Scan
M00609_2.00	NN 70-40%	CisBP	GGAAGCCCTA	50.4% identity		Open · Scan
MA1602.1	NN 70-40%	JASPAR	CGTCTACACGGG	50.4% identity		Open · Scan
M07635_2.00	NN 70-40%	CisBP	AAGTTTTCTTGTATTATATCT	50.3% identity		Open · Scan
M07588_2.00	NN 70-40%	CisBP	TCCTTCCCTCTTTCC	50.2% identity		Open · Scan
M08330_2.00	NN 70-40%	CisBP	TGGGTGCCGGACTGCTGTTCC	50.2% identity		Open · Scan
M08859_2.00	NN 70-40%	CisBP	CATTTTTTCCTCCTAGGCCT	50.1% identity		Open · Scan
M03671_2.00	NN 70-40%	CisBP	ATTACCATACAAGTGCAC	50.0% identity		Open · Scan
MA0516.1	NN 70-40%	JASPAR	GCCCCGCCCCCTCCC	50.0% identity		Open · Scan

ModCRE8

Motif	Prediction	Source	DNA binding	Support	Logo	Actions
DIMER_tr_B4DRP8_B4DRP8_HUMAN:332:383_1llm_D_1	ModCRE	Homology model	AACGGCGCCGGA	Region 332-383 · 1 3D model		Open · Scan
TFS_tr_B4DRP8_B4DRP8_HUMAN:223:497_5v3j_E_1	ModCRE	Homology model	TCCACCCCGTTTTCCCCCCCCGGGGG	Region 223-497 · 1 3D model		Open · Scan
TFS_tr_B4DRP8_B4DRP8_HUMAN:223:497_5v3m_C_1	ModCRE	Homology model	CCAGGCCAACTCGACTTCCACGGGCC	Region 223-497 · 1 3D model		Open · Scan
TFS_tr_B4DRP8_B4DRP8_HUMAN:247:522_5wjq_D_1	ModCRE	Homology model	TCATGGCCCCTCGCCATCACACCCGGCG	Region 247-522 · 1 3D model		Open · Scan
TFS_tr_B4DRP8_B4DRP8_HUMAN:331:441_5egb_A_1	ModCRE	Homology model	CCCTGAAGGAGGGGTGGT	Region 331-441 · 1 3D model		Open · Scan
TFS_tr_B4DRP8_B4DRP8_HUMAN:331:441_5ei9_E_1	ModCRE	Homology model	CCCCCGGGGGGGGGTCG	Region 331-441 · 1 3D model		Open · Scan
TFS_tr_B4DRP8_B4DRP8_HUMAN:333:441_5eh2_F_1	ModCRE	Homology model	CCCCCGGGGGGGGGTGGGG	Region 333-441 · 1 3D model		Open · Scan
TFS_tr_B4DRP8_B4DRP8_HUMAN:343:496_2i13_A_1	ModCRE	Homology model	ATGAAGAAGGAGGCCTAAAAA	Region 343-496 · 1 3D model		Open · Scan

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 540 aa

223-522

Region 223-522 8 PWM

Residues

300 aa

Domains

PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type

3D models

9 active PDBs · 6 summary rows

Templates

1LLM, 2I13, 5EGB, 5EH2, 5EI9, 5V3J, 5V3M, 5WJQ, ...

Sources

Predicted = Low

Scan this region Show models

3D Models

Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.

9 active PDB models 6 summary rows

Region 223-5229 models · 6 summary rows

Source ↕	Model ↕	Template ↕	Residues modeled ↕	Actions
Predicted = Low	DIMER_tr_B4DRP8_B4DRP8_HUMAN:332:383_1llm_D_1	1llm	332-383	View model · PDB
Predicted = Low	TFS_tr_B4DRP8_B4DRP8_HUMAN:223:497_5v3j_E_1	5v3j	223-497	View model · PDB
Predicted = Low	TFS_tr_B4DRP8_B4DRP8_HUMAN:223:497_5v3m_C_1	5v3m	223-497	View model · PDB
Predicted = Low	TFS_tr_B4DRP8_B4DRP8_HUMAN:239:492_7w1m_H_1	7w1m	239-492	View model · PDB
Predicted = Low	TFS_tr_B4DRP8_B4DRP8_HUMAN:247:522_5wjq_D_1	5wjq	247-522	View model · PDB
Predicted = Low	TFS_tr_B4DRP8_B4DRP8_HUMAN:331:441_5egb_A_1	5egb	331-441	View model · PDB
Predicted = Low	TFS_tr_B4DRP8_B4DRP8_HUMAN:331:441_5ei9_E_1	5ei9	331-441	View model · PDB
Predicted = Low	TFS_tr_B4DRP8_B4DRP8_HUMAN:333:441_5eh2_F_1	5eh2	333-441	View model · PDB
Predicted = Low	TFS_tr_B4DRP8_B4DRP8_HUMAN:343:496_2i13_A_1	2i13	343-496	View model · PDB

Model-summary evidence imported for this region.

Rank	Template	Domain	N-tails	C-tails	Chains	Identity / similarity	Coverage	Model file
2	5v3m	223:522	223	497	P:C · DNA:A,B	55.8% / 71.7%	99	View · PDB TFS_tr_B4DRP8_B4DRP8_HUMAN:223:497_5v3m_C_1
3	5v3j	223:522	223	497	P:E · DNA:A,B	55.8% / 71.7%	99	View · PDB TFS_tr_B4DRP8_B4DRP8_HUMAN:223:497_5v3j_E_1
4	2i13	223:522	343	496	P:A · DNA:C,D	55.8% / 68.2%	100	View · PDB TFS_tr_B4DRP8_B4DRP8_HUMAN:343:496_2i13_A_1
1	5wjq	223:522	247	522	P:D · DNA:A,B	55.6% / 70.6%	98	View · PDB TFS_tr_B4DRP8_B4DRP8_HUMAN:247:522_5wjq_D_1
1	1llm	223:522	332,332	383,383	P:C,D · DNA:A,B	42.3% / 57.7%	59,61	View · PDB DIMER_tr_B4DRP8_B4DRP8_HUMAN:332:383_1llm_D_1
5	7w1m	223:522	239	492	P:H · DNA:F,G	35.1% / 49.8%	78	View · PDB TFS_tr_B4DRP8_B4DRP8_HUMAN:239:492_7w1m_H_1

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

Residues	PFAM	Domain	Used by prediction region?
5-46	PF01352	KRAB box	No overlap with loaded model regions
250-272	PF00096	Zinc finger, C2H2 type	overlaps 223-522
278-300	PF00096	Zinc finger, C2H2 type	overlaps 223-522
306-328	PF00096	Zinc finger, C2H2 type	overlaps 223-522
334-356	PF00096	Zinc finger, C2H2 type	overlaps 223-522
362-384	PF00096	Zinc finger, C2H2 type	overlaps 223-522
390-412	PF00096	Zinc finger, C2H2 type	overlaps 223-522
418-440	PF00096	Zinc finger, C2H2 type	overlaps 223-522
446-468	PF00096	Zinc finger, C2H2 type	overlaps 223-522
474-496	PF00096	Zinc finger, C2H2 type	overlaps 223-522