ModCRE DB

Transcription factor

B4DS18

cDNA FLJ59243, highly similar to Zinc finger protein 443

Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 643 aa

42 Generated PWM 1 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)3
MotifPredictionSourceDNA bindingSupportLogoActions
M07659_2.00 NN 70+% CisBP GTCTTCCAAGTAGCTGGTGTT 95.8% identity Open · Scan
M07733_2.00 NN 70+% CisBP TCTTTCTCTCTCTCC 88.0% identity Open · Scan
M07731_2.00 NN 70+% CisBP TTTCCCAGCAGCAACAGCACCGCCCCCCCC 70.8% identity Open · Scan
Nearest Neighbor (70% - 40%)39
MotifPredictionSourceDNA bindingSupportLogoActions
M00939_2.00 NN 70-40% CisBP CCACCTCA 63.5% identity Open · Scan
M00960_2.00 NN 70-40% CisBP TGCATCCC 61.4% identity Open · Scan
M00944_2.00 NN 70-40% CisBP TCGCTATAA 60.2% identity Open · Scan
M00952_2.00 NN 70-40% CisBP GGATGCTC 60.2% identity Open · Scan
M00943_2.00 NN 70-40% CisBP CCCGCTGC 59.0% identity Open · Scan
M00948_2.00 NN 70-40% CisBP GCAGCACC 59.0% identity Open · Scan
M00945_2.00 NN 70-40% CisBP CACCGCAC 58.1% identity Open · Scan
M00953_2.00 NN 70-40% CisBP ATCTATAT 57.8% identity Open · Scan
M00959_2.00 NN 70-40% CisBP GCCCTCCC 57.8% identity Open · Scan
M00958_2.00 NN 70-40% CisBP CGGCATCCC 57.6% identity Open · Scan
M07770_2.00 NN 70-40% CisBP CTTGGACTT 57.4% identity Open · Scan
M00950_2.00 NN 70-40% CisBP GCAGCCCA 56.4% identity Open · Scan
M08908_2.00 NN 70-40% CisBP GCTGCTGCTTCTGCTG 56.0% identity Open · Scan
MA1588.1 NN 70-40% JASPAR GAATTCTTGGTTGAC 56.0% identity Open · Scan
M07717_2.00 NN 70-40% CisBP GGCTCCGCCCCC 55.3% identity Open · Scan
M04653_2.00 NN 70-40% CisBP GGTACGGTTGTCCATGTTGCAA 54.4% identity Open · Scan
M07627_2.00 NN 70-40% CisBP CAGTCACCTTCTGG 54.4% identity Open · Scan
M01474_2.00 NN 70-40% CisBP CGCCGATCAC 54.0% identity Open · Scan
M04598_2.00 NN 70-40% CisBP CGCTAACTCTCCACA 53.9% identity Open · Scan
M00609_2.00 NN 70-40% CisBP GGAAGCCCTA 53.2% identity Open · Scan
M07628_2.00 NN 70-40% CisBP AGTGGTTCTGCTTCT 53.0% identity Open · Scan
M08366_2.00 NN 70-40% CisBP GTTTGCTGCTTACAA 53.0% identity Open · Scan
M00955_2.00 NN 70-40% CisBP ACGTCCTCT 52.9% identity Open · Scan
M00132_2.00 NN 70-40% CisBP TGCTACCGTT 52.1% identity Open · Scan
M01174_2.00 NN 70-40% CisBP GCTACCGT 52.1% identity Open · Scan
MA1542.1 NN 70-40% JASPAR TGCTACTGTT 52.1% identity Open · Scan
M04387_2.00 NN 70-40% CisBP CGTGCTCCCC 51.8% identity Open · Scan
M07715_2.00 NN 70-40% CisBP CCGCCGCCGCCGTGG 51.8% identity Open · Scan
M03671_2.00 NN 70-40% CisBP ATTACCATACAAGTGCAC 51.2% identity Open · Scan
M01538_2.00 NN 70-40% CisBP GCCCCTGA 51.0% identity Open · Scan
M08375_2.00 NN 70-40% CisBP TTCCCCATTGGCTACTGCACCGGTCCT 51.0% identity Open · Scan
M08901_2.00 NN 70-40% CisBP CCAGTTCACACC 51.0% identity Open · Scan
M07635_2.00 NN 70-40% CisBP AAGTTTTCTTGTATTATATCT 50.8% identity Open · Scan
M04536_2.00 NN 70-40% CisBP ACGTAACCCGATACC 50.5% identity Open · Scan
M00782_2.00 NN 70-40% CisBP AGTGTGCGCTA 50.0% identity Open · Scan
M02924_2.00 NN 70-40% CisBP AGTGTTAACAGAACACCT 50.0% identity Open · Scan
M07590_2.00 NN 70-40% CisBP TTTTTTTCTTTTATTTTTTTTTTTTTTTTTTTT 50.0% identity Open · Scan
M08355_2.00 NN 70-40% CisBP GCGAACTCCTATTCATCC 50.0% identity Open · Scan
MA0750.1 NN 70-40% JASPAR GGCGACCACCGA 50.0% identity Open · Scan
ModCRE0

No generated PWM in this category.

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 643 aa
196-306

Region 196-306 0 PWM

Residues
111 aa
Domains
PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type
3D models
1 active PDB
Templates
6E93
Sources
Structure model
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
1 active PDB model
Region 196-3061 model
Actions
Predicted = Low TFS_B4DS18:196:306_6e93_A_1 6e93 196-306 View model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
3-42PF01352KRAB boxNo overlap with loaded model regions
169-189PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
225-247PF00096Zinc finger, C2H2 typeoverlaps 196-306
253-275PF00096Zinc finger, C2H2 typeoverlaps 196-306
309-331PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
337-359PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
365-387PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
393-415PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
421-443PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
449-471PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
504-526PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
532-554PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
560-582PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
588-613PF13912C2H2-type zinc fingerNo overlap with loaded model regions
621-643PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions