ModCRE DB

Transcription factor

B4DS26

Zinc finger E-box-binding homeobox 1 (Transcription factor 8)

Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 643 aa

23 Generated PWM 1 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)4
MotifPredictionSourceDNA bindingSupportLogoActions
MA0103.2 NN 70+% JASPAR CCTCACCTG 99.8% identity Open · Scan
M07842_2.00 NN 70+% CisBP CTCACCTG 99.2% identity Open · Scan
M05844_2.00 NN 70+% CisBP TCACCTGT 86.5% identity Open · Scan
MA0103.1 NN 70+% JASPAR CACCTG 84.9% identity Open · Scan
Nearest Neighbor (70% - 40%)19
MotifPredictionSourceDNA bindingSupportLogoActions
M04463_2.00 NN 70-40% CisBP CACCACGCCCA 61.5% identity Open · Scan
MA0039.1 NN 70-40% JASPAR TAAAGGAAGG 61.5% identity Open · Scan
MA0039.3 NN 70-40% JASPAR CCACACCCTGC 61.5% identity Open · Scan
MA1515.1 NN 70-40% JASPAR CACCACGCCCA 61.5% identity Open · Scan
M00952_2.00 NN 70-40% CisBP GGATGCTC 59.5% identity Open · Scan
M04465_2.00 NN 70-40% CisBP GTGATTCTTATCTTATCCTT 57.5% identity Open · Scan
M04611_2.00 NN 70-40% CisBP CTTTCGGACAC 57.5% identity Open · Scan
M06179_2.00 NN 70-40% CisBP TAAGCCTATAGA 55.5% identity Open · Scan
M00786_2.00 NN 70-40% CisBP TATATATAT 55.3% identity Open · Scan
M04536_2.00 NN 70-40% CisBP ACGTAACCCGATACC 55.3% identity Open · Scan
M04651_2.00 NN 70-40% CisBP TTCACTATTATAGTGAA 54.3% identity Open · Scan
M00019_2.00 NN 70-40% CisBP ACCCCTAATT 54.0% identity Open · Scan
M00142_2.00 NN 70-40% CisBP GTGCTCCT 53.6% identity Open · Scan
MA1564.1 NN 70-40% JASPAR GCCACGCCCCCC 51.1% identity Open · Scan
M00129_2.00 NN 70-40% CisBP AGACCCCCCAC 50.0% identity Open · Scan
M01538_2.00 NN 70-40% CisBP GCCCCTGA 50.0% identity Open · Scan
M06112_2.00 NN 70-40% CisBP CTACTTTCACCGGGG 50.0% identity Open · Scan
M07625_2.00 NN 70-40% CisBP TCTCTCTCTCTCTCTCTCTCTCTCTCTCTC 50.0% identity Open · Scan
MA0736.1 NN 70-40% JASPAR GACCCCCCGCGAAG 50.0% identity Open · Scan
ModCRE0

No generated PWM in this category.

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 643 aa
450-488

Region 450-488 0 PWM

Residues
39 aa
Domains
PF00046 · Homeodomain
3D models
1 active PDB
Templates
1HF0
Sources
Structure model
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
1 active PDB model
Region 450-4881 model
Actions
Predicted = Low DIMER_B4DS26:450:488_1hf0_B_1 1hf0 450-488 View model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
29-81PF05605Drought induced 19 protein (Di19), zinc-bindingNo overlap with loaded model regions
99-121PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
127-147PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
451-489PF00046Homeodomainoverlaps 450-488