ModCRE DB

Transcription factor

B4DS73

Zinc finger protein 711

Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 477 aa

16 Generated PWM 13 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)5
MotifPredictionSourceDNA bindingSupportLogoActions
MA0146.1 NN 70-40% JASPAR GGGGCCGAGGCCTG 66.4% identity Open · Scan
M07625_2.00 NN 70-40% CisBP TCTCTCTCTCTCTCTCTCTCTCTCTCTCTC 57.5% identity Open · Scan
M04611_2.00 NN 70-40% CisBP CTTTCGGACAC 53.1% identity Open · Scan
M01456_2.00 NN 70-40% CisBP GTGATCGGCG 51.0% identity Open · Scan
M06802_2.00 NN 70-40% CisBP ACCTTCCCCAGATAA 50.0% identity Open · Scan
ModCRE11
MotifPredictionSourceDNA bindingSupportLogoActions
TFS_tr_B4DS73_B4DS73_HUMAN:190:471_5wjq_D_1 ModCRE Homology model GGGCCCCGCCACCTGCCCCGGGCCCCCC Region 190-471 · 1 3D model Open · Scan
TFS_tr_B4DS73_B4DS73_HUMAN:192:353_5t0u_A_1 ModCRE Homology model CCGGGCGGGCGGCCCGCCACCAA Region 192-353 · 1 3D model Open · Scan
TFS_tr_B4DS73_B4DS73_HUMAN:192:414_8ssu_A_1 ModCRE Homology model CATCCCATCTGCGGCGGCG Region 192-414 · 1 3D model Open · Scan
TFS_tr_B4DS73_B4DS73_HUMAN:220:474_5v3j_E_1 ModCRE Homology model GGGAACAGTGTCCCCTAAGGGTA Region 220-474 · 1 3D model Open · Scan
TFS_tr_B4DS73_B4DS73_HUMAN:220:474_5v3m_C_1 ModCRE Homology model CCCCCCCGACCCCGTGCCCCCCTC Region 220-474 · 1 3D model Open · Scan
TFS_tr_B4DS73_B4DS73_HUMAN:223:272_3uk3_C_1 ModCRE Homology model ATGGACAAAAC Region 223-272 · 1 3D model Open · Scan
TFS_tr_B4DS73_B4DS73_HUMAN:223:272_3uk3_D_1 ModCRE Homology model GAGGTCCCGC Region 223-272 · 1 3D model Open · Scan
TFS_tr_B4DS73_B4DS73_HUMAN:223:272_4is1_C_1 ModCRE Homology model TCGGGGACGCC Region 223-272 · 1 3D model Open · Scan
TFS_tr_B4DS73_B4DS73_HUMAN:223:272_4is1_D_1 ModCRE Homology model GAAGTCCCGC Region 223-272 · 1 3D model Open · Scan
TFS_tr_B4DS73_B4DS73_HUMAN:225:386_1tf6_A_1 ModCRE Homology model TGGGGGGGGGCCCCCTTTGGGCGTGTGA Region 225-386 · 1 3D model Open · Scan
TFS_tr_B4DS73_B4DS73_HUMAN:246:415_5und_A_1 ModCRE Homology model TACCAAAGGCCCCGGACCCCCCGCG Region 246-415 · 1 3D model Open · Scan

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 477 aa
190-474

Region 190-474 11 PWM

Residues
285 aa
Domains
PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type
3D models
13 active PDBs · 6 summary rows
Templates
1LLM, 1TF6, 3UK3, 4IS1, 5T0U, 5UND, 5V3J, 5V3M, ...
Sources
Predicted = Low
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
13 active PDB models 6 summary rows
Region 190-47413 models · 6 summary rows
Actions
Predicted = Low DIMER_tr_B4DS73_B4DS73_HUMAN:220:272_1llm_D_1 1llm 220-272 View model · PDB
Predicted = Low TFS_tr_B4DS73_B4DS73_HUMAN:190:471_5wjq_D_1 5wjq 190-471 View model · PDB
Predicted = Low TFS_tr_B4DS73_B4DS73_HUMAN:192:353_5t0u_A_1 5t0u 192-353 View model · PDB
Predicted = Low TFS_tr_B4DS73_B4DS73_HUMAN:192:414_8ssu_A_1 8ssu 192-414 View model · PDB
Predicted = Low TFS_tr_B4DS73_B4DS73_HUMAN:193:472_7w1m_H_1 7w1m 193-472 View model · PDB
Predicted = Low TFS_tr_B4DS73_B4DS73_HUMAN:220:474_5v3j_E_1 5v3j 220-474 View model · PDB
Predicted = Low TFS_tr_B4DS73_B4DS73_HUMAN:220:474_5v3m_C_1 5v3m 220-474 View model · PDB
Predicted = Low TFS_tr_B4DS73_B4DS73_HUMAN:223:272_3uk3_C_1 3uk3 223-272 View model · PDB
Predicted = Low TFS_tr_B4DS73_B4DS73_HUMAN:223:272_3uk3_D_1 3uk3 223-272 View model · PDB
Predicted = Low TFS_tr_B4DS73_B4DS73_HUMAN:223:272_4is1_C_1 4is1 223-272 View model · PDB
Predicted = Low TFS_tr_B4DS73_B4DS73_HUMAN:223:272_4is1_D_1 4is1 223-272 View model · PDB
Predicted = Low TFS_tr_B4DS73_B4DS73_HUMAN:225:386_1tf6_A_1 1tf6 225-386 View model · PDB
Predicted = Low TFS_tr_B4DS73_B4DS73_HUMAN:246:415_5und_A_1 5und 246-415 View model · PDB

Model-summary evidence imported for this region.

RankTemplateDomainN-tailsC-tailsChainsIdentity / similarityCoverageModel file
1 1llm 190:474 220,220 272,272 P:C,D · DNA:A,B 37.7% / 47.2% 60,62 View · PDB DIMER_tr_B4DS73_B4DS73_HUMAN:220:272_1llm_D_1
1 5v3m 190:474 220 474 P:C · DNA:A,B 36.9% / 50.6% 90 View · PDB TFS_tr_B4DS73_B4DS73_HUMAN:220:474_5v3m_C_1
2 5v3j 190:474 220 474 P:E · DNA:A,B 36.9% / 50.6% 90 View · PDB TFS_tr_B4DS73_B4DS73_HUMAN:220:474_5v3j_E_1
3 5wjq 190:474 190 471 P:D · DNA:A,B 35.8% / 50.7% 98 View · PDB TFS_tr_B4DS73_B4DS73_HUMAN:190:471_5wjq_D_1
5 8ssu 190:474 192 414 P:A · DNA:B,C 32.3% / 44.7% 94 View · PDB TFS_tr_B4DS73_B4DS73_HUMAN:192:414_8ssu_A_1
4 7w1m 190:474 193 472 P:H · DNA:F,G 29.3% / 48.8% 86 View · PDB TFS_tr_B4DS73_B4DS73_HUMAN:193:472_7w1m_H_1

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
36-84PF04704Zfx/Zfy transcription activation regionNo overlap with loaded model regions
99-121PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
221-243PF00096Zinc finger, C2H2 typeoverlaps 190-474
278-297PF00096Zinc finger, C2H2 typeoverlaps 190-474
306-329PF00096Zinc finger, C2H2 typeoverlaps 190-474
335-357PF00096Zinc finger, C2H2 typeoverlaps 190-474
393-414PF00096Zinc finger, C2H2 typeoverlaps 190-474