ModCRE DB

Transcription factor

B4DSG8

cDNA FLJ58103, moderately similar to Zinc finger protein 433

Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 525 aa

42 Generated PWM 6 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)36
MotifPredictionSourceDNA bindingSupportLogoActions
M07628_2.00 NN 70-40% CisBP AGTGGTTCTGCTTCT 68.9% identity Open · Scan
M07627_2.00 NN 70-40% CisBP CAGTCACCTTCTGG 64.5% identity Open · Scan
M00939_2.00 NN 70-40% CisBP CCACCTCA 64.2% identity Open · Scan
M04653_2.00 NN 70-40% CisBP GGTACGGTTGTCCATGTTGCAA 63.9% identity Open · Scan
M07659_2.00 NN 70-40% CisBP GTCTTCCAAGTAGCTGGTGTT 61.0% identity Open · Scan
M07733_2.00 NN 70-40% CisBP TCTTTCTCTCTCTCC 60.8% identity Open · Scan
M00953_2.00 NN 70-40% CisBP ATCTATAT 58.3% identity Open · Scan
M00958_2.00 NN 70-40% CisBP CGGCATCCC 58.3% identity Open · Scan
M00960_2.00 NN 70-40% CisBP TGCATCCC 58.3% identity Open · Scan
M00944_2.00 NN 70-40% CisBP TCGCTATAA 57.1% identity Open · Scan
M00950_2.00 NN 70-40% CisBP GCAGCCCA 57.1% identity Open · Scan
M00952_2.00 NN 70-40% CisBP GGATGCTC 57.1% identity Open · Scan
M00959_2.00 NN 70-40% CisBP GCCCTCCC 57.1% identity Open · Scan
M07770_2.00 NN 70-40% CisBP CTTGGACTT 56.8% identity Open · Scan
M08908_2.00 NN 70-40% CisBP GCTGCTGCTTCTGCTG 56.0% identity Open · Scan
M00943_2.00 NN 70-40% CisBP CCCGCTGC 55.9% identity Open · Scan
M00948_2.00 NN 70-40% CisBP GCAGCACC 55.9% identity Open · Scan
M07731_2.00 NN 70-40% CisBP TTTCCCAGCAGCAACAGCACCGCCCCCCCC 55.3% identity Open · Scan
M06179_2.00 NN 70-40% CisBP TAAGCCTATAGA 53.7% identity Open · Scan
MA1588.1 NN 70-40% JASPAR GAATTCTTGGTTGAC 53.7% identity Open · Scan
MA1124.1 NN 70-40% JASPAR CATTCATTCATTC 53.2% identity Open · Scan
M08367_2.00 NN 70-40% CisBP GGGGTGATGACCACTCTGGCTTCTTAC 53.1% identity Open · Scan
M08985_2.00 NN 70-40% CisBP TGAGGACCTACTGTGTGCC 52.5% identity Open · Scan
M08366_2.00 NN 70-40% CisBP GTTTGCTGCTTACAA 52.4% identity Open · Scan
M00945_2.00 NN 70-40% CisBP CACCGCAC 52.3% identity Open · Scan
M02924_2.00 NN 70-40% CisBP AGTGTTAACAGAACACCT 52.2% identity Open · Scan
M04598_2.00 NN 70-40% CisBP CGCTAACTCTCCACA 52.1% identity Open · Scan
M08917_2.00 NN 70-40% CisBP GCTGAGCCATGTGGGGTGCT 51.9% identity Open · Scan
M07702_2.00 NN 70-40% CisBP CTTCTTCCTTGG 51.6% identity Open · Scan
M05844_2.00 NN 70-40% CisBP TCACCTGT 51.5% identity Open · Scan
MA0103.1 NN 70-40% JASPAR CACCTG 51.5% identity Open · Scan
MA0103.2 NN 70-40% JASPAR CCTCACCTG 51.5% identity Open · Scan
M08254_2.00 NN 70-40% CisBP CTGCCCTGGGACTTT 51.2% identity Open · Scan
M00955_2.00 NN 70-40% CisBP ACGTCCTCT 50.0% identity Open · Scan
M04611_2.00 NN 70-40% CisBP CTTTCGGACAC 50.0% identity Open · Scan
M07762_2.00 NN 70-40% CisBP GCCGCGCACAGGCTTCTAGCC 50.0% identity Open · Scan
ModCRE6
MotifPredictionSourceDNA bindingSupportLogoActions
DIMER_tr_B4DSG8_B4DSG8_HUMAN:223:272_1llm_D_1 ModCRE Homology model TTCGCGCCGAGA Region 223-272 · 1 3D model Open · Scan
TFS_tr_B4DSG8_B4DSG8_HUMAN:137:371_5v3j_E_1 ModCRE Homology model GCCCCGTTCGGTCCCGACTCCCCG Region 137-371 · 1 3D model Open · Scan
TFS_tr_B4DSG8_B4DSG8_HUMAN:137:371_5v3m_C_1 ModCRE Homology model TCCCCCGGGGGGCCGGACCGGGCCC Region 137-371 · 1 3D model Open · Scan
TFS_tr_B4DSG8_B4DSG8_HUMAN:138:371_5wjq_D_1 ModCRE Homology model TCCCCCAGGGGGGGGGGCCGCGGCG Region 138-371 · 1 3D model Open · Scan
TFS_tr_B4DSG8_B4DSG8_HUMAN:160:303_2i13_A_1 ModCRE Homology model AAAAAGAATTAGTTTAAGAAT Region 160-303 · 1 3D model Open · Scan
TFS_tr_B4DSG8_B4DSG8_HUMAN:222:332_5ei9_E_1 ModCRE Homology model CACGTGGTACGGGGGCC Region 222-332 · 1 3D model Open · Scan

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 525 aa
137-371

Region 137-371 6 PWM

Residues
235 aa
Domains
PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF13912 · C2H2-type zinc finger
3D models
6 active PDBs · 6 summary rows
Templates
1LLM, 2I13, 5EI9, 5V3J, 5V3M, 5WJQ
Sources
Predicted = Low
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
6 active PDB models 6 summary rows
Region 137-3716 models · 6 summary rows
Actions
Predicted = Low DIMER_tr_B4DSG8_B4DSG8_HUMAN:223:272_1llm_D_1 1llm 223-272 View model · PDB
Predicted = Low TFS_tr_B4DSG8_B4DSG8_HUMAN:137:371_5v3j_E_1 5v3j 137-371 View model · PDB
Predicted = Low TFS_tr_B4DSG8_B4DSG8_HUMAN:137:371_5v3m_C_1 5v3m 137-371 View model · PDB
Predicted = Low TFS_tr_B4DSG8_B4DSG8_HUMAN:138:371_5wjq_D_1 5wjq 138-371 View model · PDB
Predicted = Low TFS_tr_B4DSG8_B4DSG8_HUMAN:160:303_2i13_A_1 2i13 160-303 View model · PDB
Predicted = Low TFS_tr_B4DSG8_B4DSG8_HUMAN:222:332_5ei9_E_1 5ei9 222-332 View model · PDB

Model-summary evidence imported for this region.

RankTemplateDomainN-tailsC-tailsChainsIdentity / similarityCoverageModel file
5 5ei9 137:371 222 332 P:E · DNA:A,B 52.3% / 70.3% 100 View · PDB TFS_tr_B4DSG8_B4DSG8_HUMAN:222:332_5ei9_E_1
4 2i13 137:371 160 303 P:A · DNA:C,D 48.6% / 65.3% 93 View · PDB TFS_tr_B4DSG8_B4DSG8_HUMAN:160:303_2i13_A_1
1 1llm 137:371 223,223 272,272 P:C,D · DNA:A,B 46.0% / 60.0% 57,58 View · PDB DIMER_tr_B4DSG8_B4DSG8_HUMAN:223:272_1llm_D_1
1 5v3m 137:371 137 371 P:C · DNA:A,B 43.6% / 62.7% 84 View · PDB TFS_tr_B4DSG8_B4DSG8_HUMAN:137:371_5v3m_C_1
2 5v3j 137:371 137 371 P:E · DNA:A,B 43.6% / 62.7% 84 View · PDB TFS_tr_B4DSG8_B4DSG8_HUMAN:137:371_5v3j_E_1
3 5wjq 137:371 138 371 P:D · DNA:A,B 43.4% / 62.6% 83 View · PDB TFS_tr_B4DSG8_B4DSG8_HUMAN:138:371_5wjq_D_1

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
3-44PF01352KRAB boxNo overlap with loaded model regions
169-191PF00096Zinc finger, C2H2 typeoverlaps 137-371
225-247PF00096Zinc finger, C2H2 typeoverlaps 137-371
253-275PF13912C2H2-type zinc fingeroverlaps 137-371