ModCRE DB

Transcription factor

B4DSV2

cDNA FLJ60868, highly similar to Sal-like protein 2

Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 608 aa

26 Generated PWM 11 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)21
MotifPredictionSourceDNA bindingSupportLogoActions
M00641_2.00 NN 70-40% CisBP ATTGACCACT 60.0% identity Open · Scan
M03702_2.00 NN 70-40% CisBP GACCCCCCACGACGC 56.6% identity Open · Scan
M00953_2.00 NN 70-40% CisBP ATCTATAT 54.7% identity Open · Scan
M07667_2.00 NN 70-40% CisBP CCGCACAGGCCCCCGGGCCCC 54.7% identity Open · Scan
M01022_2.00 NN 70-40% CisBP GGACCACCCAC 53.8% identity Open · Scan
M01024_2.00 NN 70-40% CisBP GGACCACCCA 53.8% identity Open · Scan
MA0734.1 NN 70-40% JASPAR GCGACCACACTG 53.8% identity Open · Scan
M08252_2.00 NN 70-40% CisBP CCGGCTCCAGCACCC 52.8% identity Open · Scan
M00954_2.00 NN 70-40% CisBP CTACCCTA 52.5% identity Open · Scan
M06133_2.00 NN 70-40% CisBP CAGACCCCCCGCGGA 51.2% identity Open · Scan
M08254_2.00 NN 70-40% CisBP CTGCCCTGGGACTTT 51.2% identity Open · Scan
M00608_2.00 NN 70-40% CisBP CCTGTTG 51.0% identity Open · Scan
M03691_2.00 NN 70-40% CisBP ATGCAACAGGTGG 50.9% identity Open · Scan
M06087_2.00 NN 70-40% CisBP ACCACCTGTTGCA 50.9% identity Open · Scan
M10203_2.00 NN 70-40% CisBP CCCCAAACCACCCC 50.8% identity Open · Scan
MA0073.1 NN 70-40% JASPAR CCCCAAACCACCCCCCCCCA 50.8% identity Open · Scan
M00765_2.00 NN 70-40% CisBP CCCGCCCCC 50.0% identity Open · Scan
M02924_2.00 NN 70-40% CisBP AGTGTTAACAGAACACCT 50.0% identity Open · Scan
M05859_2.00 NN 70-40% CisBP GGCCACGCCCACT 50.0% identity Open · Scan
MA0685.1 NN 70-40% JASPAR TAAGCCACGCCCCCTTT 50.0% identity Open · Scan
MA0744.1 NN 70-40% JASPAR ATGCAACAGGTGG 50.0% identity Open · Scan
ModCRE5
MotifPredictionSourceDNA bindingSupportLogoActions
TFS_tr_B4DSV2_B4DSV2_HUMAN:373:423_5yj3_C_1 ModCRE Homology model GACCG Region 373-423 · 1 3D model Open · Scan
TFS_tr_B4DSV2_B4DSV2_HUMAN:374:423_3uk3_C_1 ModCRE Homology model GAAGGGAATGT Region 374-423 · 1 3D model Open · Scan
TFS_tr_B4DSV2_B4DSV2_HUMAN:374:423_4is1_C_1 ModCRE Homology model AACCTGAATGT Region 374-423 · 1 3D model Open · Scan
TFS_tr_B4DSV2_B4DSV2_HUMAN:374:425_3uk3_D_1 ModCRE Homology model TGTGTCCACC Region 374-425 · 1 3D model Open · Scan
TFS_tr_B4DSV2_B4DSV2_HUMAN:374:425_4is1_D_1 ModCRE Homology model TGTGTCCACC Region 374-425 · 1 3D model Open · Scan

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 608 aa
372-430

Region 372-430 5 PWM

Residues
59 aa
Domains
PF00096 · Zinc finger, C2H2 type
3D models
11 active PDBs · 6 summary rows
Templates
1LLM, 3UK3, 4IS1, 5YJ3, 6E93, 6E94, 7N5U, 8A4I, ...
Sources
Predicted = Low
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
11 active PDB models 6 summary rows
Region 372-43011 models · 6 summary rows
Actions
Predicted = Low DIMER_tr_B4DSV2_B4DSV2_HUMAN:374:419_1llm_D_1 1llm 374-419 View model · PDB
Predicted = Low TFS_tr_B4DSV2_B4DSV2_HUMAN:372:423_8a4i_I_1 8a4i 372-423 View model · PDB
Predicted = Low TFS_tr_B4DSV2_B4DSV2_HUMAN:372:423_8cuc_F_1 8cuc 372-423 View model · PDB
Predicted = Low TFS_tr_B4DSV2_B4DSV2_HUMAN:373:423_5yj3_C_1 5yj3 373-423 View model · PDB
Predicted = Low TFS_tr_B4DSV2_B4DSV2_HUMAN:373:423_6e93_A_1 6e93 373-423 View model · PDB
Predicted = Low TFS_tr_B4DSV2_B4DSV2_HUMAN:373:423_6e94_A_1 6e94 373-423 View model · PDB
Predicted = Low TFS_tr_B4DSV2_B4DSV2_HUMAN:374:423_3uk3_C_1 3uk3 374-423 View model · PDB
Predicted = Low TFS_tr_B4DSV2_B4DSV2_HUMAN:374:423_4is1_C_1 4is1 374-423 View model · PDB
Predicted = Low TFS_tr_B4DSV2_B4DSV2_HUMAN:374:425_3uk3_D_1 3uk3 374-425 View model · PDB
Predicted = Low TFS_tr_B4DSV2_B4DSV2_HUMAN:374:425_4is1_D_1 4is1 374-425 View model · PDB
Predicted = Low TFS_tr_B4DSV2_B4DSV2_HUMAN:374:430_7n5u_A_1 7n5u 374-430 View model · PDB

Model-summary evidence imported for this region.

RankTemplateDomainN-tailsC-tailsChainsIdentity / similarityCoverageModel file
1 8cuc 370:442 372 423 P:F · DNA:A,B 61.5% / 75.0% 96 View · PDB TFS_tr_B4DSV2_B4DSV2_HUMAN:372:423_8cuc_F_1
2 8a4i 370:442 372 423 P:I · DNA:A,B 61.5% / 75.0% 96 View · PDB TFS_tr_B4DSV2_B4DSV2_HUMAN:372:423_8a4i_I_1
3 6e94 370:442 373 423 P:A · DNA:C,D 49.0% / 66.7% 45 View · PDB TFS_tr_B4DSV2_B4DSV2_HUMAN:373:423_6e94_A_1
4 6e93 370:442 373 423 P:A · DNA:C,D 49.0% / 66.7% 45 View · PDB TFS_tr_B4DSV2_B4DSV2_HUMAN:373:423_6e93_A_1
5 7n5u 370:442 374 430 P:A · DNA:X,Y 45.6% / 63.2% 69 View · PDB TFS_tr_B4DSV2_B4DSV2_HUMAN:374:430_7n5u_A_1
1 1llm 370:442 374,374 419,419 P:C,D · DNA:A,B 39.1% / 58.7% 52,54 View · PDB DIMER_tr_B4DSV2_B4DSV2_HUMAN:374:419_1llm_D_1

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
401-423PF00096Zinc finger, C2H2 typeoverlaps 372-430