ModCRE DB

Transcription factor

B4DT98

cDNA FLJ59420, highly similar to Zinc finger protein 562

Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 310 aa

52 Generated PWM 16 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)42
MotifPredictionSourceDNA bindingSupportLogoActions
M00950_2.00 NN 70-40% CisBP GCAGCCCA 60.0% identity Open · Scan
M00955_2.00 NN 70-40% CisBP ACGTCCTCT 60.0% identity Open · Scan
M00959_2.00 NN 70-40% CisBP GCCCTCCC 60.0% identity Open · Scan
M00944_2.00 NN 70-40% CisBP TCGCTATAA 58.8% identity Open · Scan
M00948_2.00 NN 70-40% CisBP GCAGCACC 58.8% identity Open · Scan
M00953_2.00 NN 70-40% CisBP ATCTATAT 58.8% identity Open · Scan
M00960_2.00 NN 70-40% CisBP TGCATCCC 58.8% identity Open · Scan
M04653_2.00 NN 70-40% CisBP GGTACGGTTGTCCATGTTGCAA 58.7% identity Open · Scan
M00939_2.00 NN 70-40% CisBP CCACCTCA 57.6% identity Open · Scan
M00943_2.00 NN 70-40% CisBP CCCGCTGC 57.6% identity Open · Scan
M00952_2.00 NN 70-40% CisBP GGATGCTC 57.6% identity Open · Scan
M00958_2.00 NN 70-40% CisBP CGGCATCCC 57.6% identity Open · Scan
M02924_2.00 NN 70-40% CisBP AGTGTTAACAGAACACCT 57.5% identity Open · Scan
M08325_2.00 NN 70-40% CisBP TTTTTTTTT 56.3% identity Open · Scan
M01538_2.00 NN 70-40% CisBP GCCCCTGA 55.8% identity Open · Scan
M08985_2.00 NN 70-40% CisBP TGAGGACCTACTGTGTGCC 55.2% identity Open · Scan
M04650_2.00 NN 70-40% CisBP GCATAACTGCCCCGCTGCC 54.6% identity Open · Scan
M00149_2.00 NN 70-40% CisBP CGTACGCC 54.3% identity Open · Scan
M04611_2.00 NN 70-40% CisBP CTTTCGGACAC 54.3% identity Open · Scan
MA1124.1 NN 70-40% JASPAR CATTCATTCATTC 53.9% identity Open · Scan
M04613_2.00 NN 70-40% CisBP CTCATGTGCTAATTACAAA 53.6% identity Open · Scan
M01042_2.00 NN 70-40% CisBP TGGGACCTGA 53.3% identity Open · Scan
M07562_2.00 NN 70-40% CisBP GAAAAAAAC 52.5% identity Open · Scan
M08908_2.00 NN 70-40% CisBP GCTGCTGCTTCTGCTG 52.3% identity Open · Scan
MA1602.1 NN 70-40% JASPAR CGTCTACACGGG 51.8% identity Open · Scan
M01868_2.00 NN 70-40% CisBP TCTTGGCG 51.5% identity Open · Scan
M04505_2.00 NN 70-40% CisBP AGCTTTTCCCACAC 51.4% identity Open · Scan
M07762_2.00 NN 70-40% CisBP GCCGCGCACAGGCTTCTAGCC 51.4% identity Open · Scan
M00609_2.00 NN 70-40% CisBP GGAAGCCCTA 51.3% identity Open · Scan
M04598_2.00 NN 70-40% CisBP CGCTAACTCTCCACA 51.3% identity Open · Scan
M04387_2.00 NN 70-40% CisBP CGTGCTCCCC 50.9% identity Open · Scan
M07678_2.00 NN 70-40% CisBP CCCGCCCCCTCCTCCCCCTTCCCACCC 50.8% identity Open · Scan
M07635_2.00 NN 70-40% CisBP AAGTTTTCTTGTATTATATCT 50.7% identity Open · Scan
M01181_2.00 NN 70-40% CisBP GCGCATCCCC 50.6% identity Open · Scan
M07623_2.00 NN 70-40% CisBP GTCTAATAGAGCTGGGCTGCA 50.6% identity Open · Scan
M04465_2.00 NN 70-40% CisBP GTGATTCTTATCTTATCCTT 50.3% identity Open · Scan
M07683_2.00 NN 70-40% CisBP GTGGGAAAGCCT 50.3% identity Open · Scan
MA1601.1 NN 70-40% JASPAR ATGTGGGAAA 50.3% identity Open · Scan
M00645_2.00 NN 70-40% CisBP CGCCCACGCA 50.0% identity Open · Scan
M08540_2.00 NN 70-40% CisBP CCCCT 50.0% identity Open · Scan
MA0079.1 NN 70-40% JASPAR GGGGCGGGGT 50.0% identity Open · Scan
MA0750.1 NN 70-40% JASPAR GGCGACCACCGA 50.0% identity Open · Scan
ModCRE10
MotifPredictionSourceDNA bindingSupportLogoActions
TFS_tr_B4DT98_B4DT98_HUMAN:11:37_4r2s_A_1 ModCRE Homology model ACCCGCTCCT Region 11-37 · 1 3D model Open · Scan
TFS_tr_B4DT98_B4DT98_HUMAN:11:38_2i13_A_1 ModCRE Homology model GGCCCCCGGGGCG Region 11-38 · 1 3D model Open · Scan
TFS_tr_B4DT98_B4DT98_HUMAN:12:37_1ubd_C_1 ModCRE Homology model TGGAGAGTCTTA Region 12-37 · 1 3D model Open · Scan
TFS_tr_B4DT98_B4DT98_HUMAN:12:38_1g2d_C_1 ModCRE Homology model GACTAAGAGGG Region 12-38 · 1 3D model Open · Scan
TFS_tr_B4DT98_B4DT98_HUMAN:12:38_1g2f_C_1 ModCRE Homology model GACTTGAATCA Region 12-38 · 1 3D model Open · Scan
TFS_tr_B4DT98_B4DT98_HUMAN:65:110_4is1_D_1 ModCRE Homology model TCTCACACCG Region 65-110 · 1 3D model Open · Scan
TFS_tr_B4DT98_B4DT98_HUMAN:65:110_5yj3_C_1 ModCRE Homology model CGAAA Region 65-110 · 1 3D model Open · Scan
TFS_tr_B4DT98_B4DT98_HUMAN:65:138_1a1g_A_1 ModCRE Homology model AGATGTGGCA Region 65-138 · 1 3D model Open · Scan
TFS_tr_B4DT98_B4DT98_HUMAN:86:139_1f2i_G_1 ModCRE Homology model GCACGTTGTAC Region 86-139 · 1 3D model Open · Scan
TFS_tr_B4DT98_B4DT98_HUMAN:86:139_1f2i_H_1 ModCRE Homology model AAAAAACGCGC Region 86-139 · 1 3D model Open · Scan

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 310 aa
11-38
47-310

Region 11-38 5 PWM

Residues
28 aa
Domains
PF00096 · Zinc finger, C2H2 type
3D models
5 active PDBs
Templates
1G2D, 1G2F, 1UBD, 2I13, 4R2S
Sources
Predicted = Low
Scan this region Show models

Region 47-310 5 PWM

Residues
264 aa
Domains
PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type
3D models
11 active PDBs · 6 summary rows
Templates
1A1G, 1F2I, 1LLM, 2I13, 4IS1, 5EI9, 5V3J, 5V3M, ...
Sources
Predicted = Low
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
16 active PDB models 6 summary rows
Region 11-385 models
Actions
Predicted = Low TFS_tr_B4DT98_B4DT98_HUMAN:11:37_4r2s_A_1 4r2s 11-37 View model · PDB
Predicted = Low TFS_tr_B4DT98_B4DT98_HUMAN:11:38_2i13_A_1 2i13 11-38 View model · PDB
Predicted = Low TFS_tr_B4DT98_B4DT98_HUMAN:12:37_1ubd_C_1 1ubd 12-37 View model · PDB
Predicted = Low TFS_tr_B4DT98_B4DT98_HUMAN:12:38_1g2d_C_1 1g2d 12-38 View model · PDB
Predicted = Low TFS_tr_B4DT98_B4DT98_HUMAN:12:38_1g2f_C_1 1g2f 12-38 View model · PDB
Region 47-31011 models · 6 summary rows
Actions
Predicted = Low DIMER_tr_B4DT98_B4DT98_HUMAN:254:302_1llm_D_1 1llm 254-302 View model · PDB
Predicted = Low TFS_tr_B4DT98_B4DT98_HUMAN:153:306_2i13_A_1 2i13 153-306 View model · PDB
Predicted = Low TFS_tr_B4DT98_B4DT98_HUMAN:198:307_5ei9_E_1 5ei9 198-307 View model · PDB
Predicted = Low TFS_tr_B4DT98_B4DT98_HUMAN:47:307_5wjq_D_1 5wjq 47-307 View model · PDB
Predicted = Low TFS_tr_B4DT98_B4DT98_HUMAN:61:310_5v3j_E_1 5v3j 61-310 View model · PDB
Predicted = Low TFS_tr_B4DT98_B4DT98_HUMAN:61:310_5v3m_C_1 5v3m 61-310 View model · PDB
Predicted = Low TFS_tr_B4DT98_B4DT98_HUMAN:65:110_4is1_D_1 4is1 65-110 View model · PDB
Predicted = Low TFS_tr_B4DT98_B4DT98_HUMAN:65:110_5yj3_C_1 5yj3 65-110 View model · PDB
Predicted = Low TFS_tr_B4DT98_B4DT98_HUMAN:65:138_1a1g_A_1 1a1g 65-138 View model · PDB
Predicted = Low TFS_tr_B4DT98_B4DT98_HUMAN:86:139_1f2i_G_1 1f2i 86-139 View model · PDB
Predicted = Low TFS_tr_B4DT98_B4DT98_HUMAN:86:139_1f2i_H_1 1f2i 86-139 View model · PDB

Model-summary evidence imported for this region.

RankTemplateDomainN-tailsC-tailsChainsIdentity / similarityCoverageModel file
5 5ei9 41:310 198 307 P:E · DNA:A,B 53.6% / 67.3% 99 View · PDB TFS_tr_B4DT98_B4DT98_HUMAN:198:307_5ei9_E_1
1 1llm 41:310 254,254 302,302 P:C,D · DNA:A,B 51.0% / 65.3% 56,57 View · PDB DIMER_tr_B4DT98_B4DT98_HUMAN:254:302_1llm_D_1
4 2i13 41:310 153 306 P:A · DNA:C,D 50.0% / 65.6% 100 View · PDB TFS_tr_B4DT98_B4DT98_HUMAN:153:306_2i13_A_1
2 5v3m 41:310 61 310 P:C · DNA:A,B 46.4% / 63.6% 90 View · PDB TFS_tr_B4DT98_B4DT98_HUMAN:61:310_5v3m_C_1
3 5v3j 41:310 61 310 P:E · DNA:A,B 46.4% / 63.6% 90 View · PDB TFS_tr_B4DT98_B4DT98_HUMAN:61:310_5v3j_E_1
1 5wjq 41:310 47 307 P:D · DNA:A,B 44.4% / 62.5% 92 View · PDB TFS_tr_B4DT98_B4DT98_HUMAN:47:307_5wjq_D_1

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
11-30PF00096Zinc finger, C2H2 typeoverlaps 11-38
88-110PF00096Zinc finger, C2H2 typeoverlaps 47-310
148-166PF00096Zinc finger, C2H2 typeoverlaps 47-310
172-194PF00096Zinc finger, C2H2 typeoverlaps 47-310
200-222PF00096Zinc finger, C2H2 typeoverlaps 47-310
228-250PF00096Zinc finger, C2H2 typeoverlaps 47-310
256-278PF00096Zinc finger, C2H2 typeoverlaps 47-310
284-306PF00096Zinc finger, C2H2 typeoverlaps 47-310