ModCRE DB

Transcription factor

B4DTA0

cDNA FLJ59049, highly similar to Homo sapiens zinc finger protein 404 (ZNF404), mRNA

Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 518 aa

82 Generated PWM 6 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)77
MotifPredictionSourceDNA bindingSupportLogoActions
M04653_2.00 NN 70-40% CisBP GGTACGGTTGTCCATGTTGCAA 64.1% identity Open · Scan
M00939_2.00 NN 70-40% CisBP CCACCTCA 63.8% identity Open · Scan
M08985_2.00 NN 70-40% CisBP TGAGGACCTACTGTGTGCC 61.4% identity Open · Scan
M07689_2.00 NN 70-40% CisBP ACCCAGGCTCCTTCCATCTTGTGGCTC 60.2% identity Open · Scan
M00953_2.00 NN 70-40% CisBP ATCTATAT 60.0% identity Open · Scan
M00955_2.00 NN 70-40% CisBP ACGTCCTCT 59.5% identity Open · Scan
M00952_2.00 NN 70-40% CisBP GGATGCTC 59.0% identity Open · Scan
M00960_2.00 NN 70-40% CisBP TGCATCCC 59.0% identity Open · Scan
M00950_2.00 NN 70-40% CisBP GCAGCCCA 58.8% identity Open · Scan
MA1124.1 NN 70-40% JASPAR CATTCATTCATTC 58.1% identity Open · Scan
M06084_2.00 NN 70-40% CisBP AGACCACCCAC 58.0% identity Open · Scan
M00943_2.00 NN 70-40% CisBP CCCGCTGC 57.8% identity Open · Scan
M00959_2.00 NN 70-40% CisBP GCCCTCCC 57.6% identity Open · Scan
M02924_2.00 NN 70-40% CisBP AGTGTTAACAGAACACCT 57.5% identity Open · Scan
M04650_2.00 NN 70-40% CisBP GCATAACTGCCCCGCTGCC 57.5% identity Open · Scan
M07700_2.00 NN 70-40% CisBP ATGTTGTGAGGAAGCCCA 56.9% identity Open · Scan
M07635_2.00 NN 70-40% CisBP AAGTTTTCTTGTATTATATCT 56.7% identity Open · Scan
M08330_2.00 NN 70-40% CisBP TGGGTGCCGGACTGCTGTTCC 56.7% identity Open · Scan
M00948_2.00 NN 70-40% CisBP GCAGCACC 56.6% identity Open · Scan
M00944_2.00 NN 70-40% CisBP TCGCTATAA 56.4% identity Open · Scan
M08347_2.00 NN 70-40% CisBP GCCCTGGGCAGC 56.1% identity Open · Scan
MA1587.1 NN 70-40% JASPAR CCTCGACCTCCTGA 55.9% identity Open · Scan
M08267_2.00 NN 70-40% CisBP CAGTTTCATTTTCC 55.6% identity Open · Scan
M08934_2.00 NN 70-40% CisBP GCTGTACCTGCTTATTAGGC 55.3% identity Open · Scan
M00958_2.00 NN 70-40% CisBP CGGCATCCC 55.2% identity Open · Scan
M00782_2.00 NN 70-40% CisBP AGTGTGCGCTA 54.6% identity Open · Scan
M07729_2.00 NN 70-40% CisBP CCAGACTGCCTGCCAAAACCCCCT 54.5% identity Open · Scan
M04598_2.00 NN 70-40% CisBP CGCTAACTCTCCACA 54.3% identity Open · Scan
M04611_2.00 NN 70-40% CisBP CTTTCGGACAC 54.3% identity Open · Scan
M08375_2.00 NN 70-40% CisBP TTCCCCATTGGCTACTGCACCGGTCCT 54.3% identity Open · Scan
M08256_2.00 NN 70-40% CisBP GTGCCTT 54.2% identity Open · Scan
M07693_2.00 NN 70-40% CisBP CTCCTGTGTGTGCCTTGGCTG 54.0% identity Open · Scan
M07649_2.00 NN 70-40% CisBP CCCCCCCCCCCCTCAGGAATGCC 53.9% identity Open · Scan
M04621_2.00 NN 70-40% CisBP AGCAATTCCGCTCA 53.6% identity Open · Scan
M07753_2.00 NN 70-40% CisBP TGCATTCCTTGGCTTGTG 53.6% identity Open · Scan
MA1589.1 NN 70-40% JASPAR TAGGAGTGGAATTGCTGGGTC 53.6% identity Open · Scan
M08944_2.00 NN 70-40% CisBP TACCATGCTGTTTTGATTAC 53.4% identity Open · Scan
M08255_2.00 NN 70-40% CisBP CTCTTCCGGT 53.3% identity Open · Scan
M07762_2.00 NN 70-40% CisBP GCCGCGCACAGGCTTCTAGCC 53.1% identity Open · Scan
M07590_2.00 NN 70-40% CisBP TTTTTTTCTTTTATTTTTTTTTTTTTTTTTTTT 53.0% identity Open · Scan
M07686_2.00 NN 70-40% CisBP TAGCTTGTTTCCAGCCAC 53.0% identity Open · Scan
M04613_2.00 NN 70-40% CisBP CTCATGTGCTAATTACAAA 52.8% identity Open · Scan
M08329_2.00 NN 70-40% CisBP GCTGCATAGTATTCC 52.8% identity Open · Scan
M08365_2.00 NN 70-40% CisBP GCCAGCAGCCATCAG 52.8% identity Open · Scan
M07648_2.00 NN 70-40% CisBP GCTTGCAAAAAAAATTTAACTCCCAGCTC 52.6% identity Open · Scan
M08371_2.00 NN 70-40% CisBP CCAGACTTGTCCTCT 52.6% identity Open · Scan
M07581_2.00 NN 70-40% CisBP TCCCCTGTGCTTCTCTCCCCT 52.3% identity Open · Scan
M08254_2.00 NN 70-40% CisBP CTGCCCTGGGACTTT 52.3% identity Open · Scan
M07620_2.00 NN 70-40% CisBP TTGGATCTGTGGATTCATGTCTTTCAT 52.2% identity Open · Scan
M07707_2.00 NN 70-40% CisBP TCCCGC 52.2% identity Open · Scan
M07764_2.00 NN 70-40% CisBP CTGCACTCTCCCCTTCCCCCCCTCCCC 52.2% identity Open · Scan
M07727_2.00 NN 70-40% CisBP CGCCGCCTCCCC 52.0% identity Open · Scan
M08252_2.00 NN 70-40% CisBP CCGGCTCCAGCACCC 52.0% identity Open · Scan
MA1596.1 NN 70-40% JASPAR GCCTCAGCCTCCCGAG 52.0% identity Open · Scan
M04465_2.00 NN 70-40% CisBP GTGATTCTTATCTTATCCTT 51.7% identity Open · Scan
M07685_2.00 NN 70-40% CisBP CTTTCCAGCCAC 51.7% identity Open · Scan
M08355_2.00 NN 70-40% CisBP GCGAACTCCTATTCATCC 51.7% identity Open · Scan
M08860_2.00 NN 70-40% CisBP TCTTATAAGGGCACTAATCCCATT 51.7% identity Open · Scan
M07566_2.00 NN 70-40% CisBP TCAAACCATCCTTGC 51.5% identity Open · Scan
M08335_2.00 NN 70-40% CisBP AGTCGTTGTCTG 51.5% identity Open · Scan
M08245_2.00 NN 70-40% CisBP TGGTGCCTTATTCCC 51.4% identity Open · Scan
M08334_2.00 NN 70-40% CisBP TTTGTTTTTTTCTGATTGCTTTTTACTTAT 51.2% identity Open · Scan
M08395_2.00 NN 70-40% CisBP GCTGCCTACTCTTCC 51.2% identity Open · Scan
M07646_2.00 NN 70-40% CisBP CTTTTTTTT 51.1% identity Open · Scan
M08325_2.00 NN 70-40% CisBP TTTTTTTTT 50.9% identity Open · Scan
M07587_2.00 NN 70-40% CisBP CCCCCTCCCCAGTCGAGCCCCCGC 50.8% identity Open · Scan
M07658_2.00 NN 70-40% CisBP CCGCCGCAGCCGCCG 50.8% identity Open · Scan
M07761_2.00 NN 70-40% CisBP CTGATTATTCACCCA 50.8% identity Open · Scan
M07714_2.00 NN 70-40% CisBP AGCCCATTGGGGCCTATGCCC 50.7% identity Open · Scan
M07598_2.00 NN 70-40% CisBP CTGACAATACCAAGTGTTGAC 50.6% identity Open · Scan
M08309_2.00 NN 70-40% CisBP AAAAACCCCCCTGCAGAGCCCAGCCCT 50.6% identity Open · Scan
M00945_2.00 NN 70-40% CisBP CACCGCAC 50.5% identity Open · Scan
M04387_2.00 NN 70-40% CisBP CGTGCTCCCC 50.4% identity Open · Scan
M08279_2.00 NN 70-40% CisBP CCTCCCTCC 50.4% identity Open · Scan
M07588_2.00 NN 70-40% CisBP TCCTTCCCTCTTTCC 50.3% identity Open · Scan
M08367_2.00 NN 70-40% CisBP GGGGTGATGACCACTCTGGCTTCTTAC 50.1% identity Open · Scan
M08311_2.00 NN 70-40% CisBP CTGGAACAGAAGGGGCGA 50.0% identity Open · Scan
ModCRE5
MotifPredictionSourceDNA bindingSupportLogoActions
DIMER_tr_B4DTA0_B4DTA0_HUMAN:459:512_1llm_C_1 ModCRE Homology model TACCGCGCGGAT Region 459-512 · 1 3D model Open · Scan
TFS_tr_B4DTA0_B4DTA0_HUMAN:208:484_5v3j_E_1 ModCRE Homology model CCCCGCCCCCAGGGCGGGGCCCCCGG Region 208-484 · 1 3D model Open · Scan
TFS_tr_B4DTA0_B4DTA0_HUMAN:208:484_5v3m_C_1 ModCRE Homology model GATGGGGCCCCCGGGTGTCCTTTACG Region 208-484 · 1 3D model Open · Scan
TFS_tr_B4DTA0_B4DTA0_HUMAN:235:511_5wjq_D_1 ModCRE Homology model CGGAGGGGGCGCCTGAGAAAATTATCGG Region 235-511 · 1 3D model Open · Scan
TFS_tr_B4DTA0_B4DTA0_HUMAN:274:427_2i13_A_1 ModCRE Homology model ATTATGTAGCTACGTGTAATT Region 274-427 · 1 3D model Open · Scan

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 518 aa
208-512

Region 208-512 5 PWM

Residues
305 aa
Domains
PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF13465 · Zinc-finger double domain PF00096 · Zinc finger, C2H2 type
3D models
6 active PDBs · 6 summary rows
Templates
1LLM, 2I13, 5V3J, 5V3M, 5WJQ, 7W1M
Sources
Predicted = Low
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
6 active PDB models 6 summary rows
Region 208-5126 models · 6 summary rows
Actions
Predicted = Low DIMER_tr_B4DTA0_B4DTA0_HUMAN:459:512_1llm_C_1 1llm 459-512 View model · PDB
Predicted = Low TFS_tr_B4DTA0_B4DTA0_HUMAN:208:484_5v3j_E_1 5v3j 208-484 View model · PDB
Predicted = Low TFS_tr_B4DTA0_B4DTA0_HUMAN:208:484_5v3m_C_1 5v3m 208-484 View model · PDB
Predicted = Low TFS_tr_B4DTA0_B4DTA0_HUMAN:209:507_7w1m_H_1 7w1m 209-507 View model · PDB
Predicted = Low TFS_tr_B4DTA0_B4DTA0_HUMAN:235:511_5wjq_D_1 5wjq 235-511 View model · PDB
Predicted = Low TFS_tr_B4DTA0_B4DTA0_HUMAN:274:427_2i13_A_1 2i13 274-427 View model · PDB

Model-summary evidence imported for this region.

RankTemplateDomainN-tailsC-tailsChainsIdentity / similarityCoverageModel file
1 5wjq 124:514 235 511 P:D · DNA:A,B 53.4% / 69.3% 98 View · PDB TFS_tr_B4DTA0_B4DTA0_HUMAN:235:511_5wjq_D_1
4 2i13 124:514 274 427 P:A · DNA:C,D 52.6% / 66.2% 100 View · PDB TFS_tr_B4DTA0_B4DTA0_HUMAN:274:427_2i13_A_1
2 5v3m 124:514 208 484 P:C · DNA:A,B 52.3% / 68.6% 100 View · PDB TFS_tr_B4DTA0_B4DTA0_HUMAN:208:484_5v3m_C_1
3 5v3j 124:514 208 484 P:E · DNA:A,B 52.3% / 68.6% 100 View · PDB TFS_tr_B4DTA0_B4DTA0_HUMAN:208:484_5v3j_E_1
1 1llm 124:514 459,459 512,512 P:C,D · DNA:A,B 40.7% / 59.3% 62,63 View · PDB DIMER_tr_B4DTA0_B4DTA0_HUMAN:459:512_1llm_C_1
5 7w1m 124:514 209 507 P:H · DNA:F,G 35.1% / 49.7% 92 View · PDB TFS_tr_B4DTA0_B4DTA0_HUMAN:209:507_7w1m_H_1

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
125-147PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
153-175PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
181-203PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
237-259PF00096Zinc finger, C2H2 typeoverlaps 208-512
265-287PF00096Zinc finger, C2H2 typeoverlaps 208-512
293-315PF00096Zinc finger, C2H2 typeoverlaps 208-512
321-343PF00096Zinc finger, C2H2 typeoverlaps 208-512
349-371PF00096Zinc finger, C2H2 typeoverlaps 208-512
377-399PF00096Zinc finger, C2H2 typeoverlaps 208-512
405-427PF00096Zinc finger, C2H2 typeoverlaps 208-512
448-472PF13465Zinc-finger double domainoverlaps 208-512
490-511PF00096Zinc finger, C2H2 typeoverlaps 208-512