Region 16-70 0 PWM
- Residues
- 55 aa
- Domains
- PF00010 · Helix-loop-helix DNA-binding domain
- 3D models
- 1 active PDB
- Templates
- 1AM9
- Sources
- Structure model
Transcription factor
B4DU20
cDNA FLJ52278, highly similar to Homo sapiens hairy/enhancer-of-split related with YRPW motif-like (HEYL), mRNA
Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 300 aa
Motif Prediction
Only entries with a generated matrix are shown here.
Known0
No generated PWM in this category.
Nearest Neighbor (>70%)4
| Motif | Prediction | Source | DNA binding | Support | Logo | Actions |
|---|---|---|---|---|---|---|
| M02790_2.00 | NN 70+% | CisBP | GGCACGTGTC | 78.1% identity | Open · Scan | |
| MA0649.1 | NN 70+% | JASPAR | GACACGTGCC | 75.0% identity | Open · Scan | |
| M01722_2.00 | NN 70+% | CisBP | GCACGTGTC | 74.2% identity | Open · Scan | |
| MA0823.1 | NN 70+% | JASPAR | GACACGTGCC | 72.0% identity | Open · Scan |
Nearest Neighbor (70% - 40%)4
| Motif | Prediction | Source | DNA binding | Support | Logo | Actions |
|---|---|---|---|---|---|---|
| M03616_2.00 | NN 70-40% | CisBP | GACACGTGTC | 57.3% identity | Open · Scan | |
| M04125_2.00 | NN 70-40% | CisBP | GTCACATGAC | 54.1% identity | Open · Scan | |
| M09478_2.00 | NN 70-40% | CisBP | CACGTGAC | 54.1% identity | Open · Scan | |
| MA0603.1 | NN 70-40% | JASPAR | GGTCACGTGC | 54.1% identity | Open · Scan |
ModCRE0
No generated PWM in this category.
Model-supported DNA-binding regions
Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.
1
300 aa
16-70
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
1 active PDB model
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
Region 16-701 model
| Actions | ||||
|---|---|---|---|---|
| Predicted = Low | DIMER_B4DU20:16:70_1am9_A_1 | 1am9 | 16-70 | View model · PDB |
View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.
Domains
Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.
| Residues | PFAM | Domain | Used by prediction region? |
|---|---|---|---|
| 16-71 | PF00010 | Helix-loop-helix DNA-binding domain | overlaps 16-70 |
| 90-130 | PF07527 | Hairy Orange | No overlap with loaded model regions |