ModCRE DB

Transcription factor

B4DU56

cDNA FLJ55612, highly similar to Zinc finger protein 595

Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 616 aa

77 Generated PWM 6 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)71
MotifPredictionSourceDNA bindingSupportLogoActions
M00955_2.00 NN 70-40% CisBP ACGTCCTCT 68.2% identity Open · Scan
M07586_2.00 NN 70-40% CisBP GGGACCCGGGTGGGGGCGTCCCCC 65.3% identity Open · Scan
M07715_2.00 NN 70-40% CisBP CCGCCGCCGCCGTGG 63.1% identity Open · Scan
M08295_2.00 NN 70-40% CisBP CTGCTGGAATCTCCA 63.1% identity Open · Scan
M00939_2.00 NN 70-40% CisBP CCACCTCA 62.3% identity Open · Scan
M07575_2.00 NN 70-40% CisBP TCTCCAAGGCGGCCAGCA 62.1% identity Open · Scan
M07714_2.00 NN 70-40% CisBP AGCCCATTGGGGCCTATGCCC 61.3% identity Open · Scan
M04611_2.00 NN 70-40% CisBP CTTTCGGACAC 60.3% identity Open · Scan
M07775_2.00 NN 70-40% CisBP GCCGAAACCCGGG 60.3% identity Open · Scan
M00944_2.00 NN 70-40% CisBP TCGCTATAA 60.0% identity Open · Scan
M00950_2.00 NN 70-40% CisBP GCAGCCCA 60.0% identity Open · Scan
M00952_2.00 NN 70-40% CisBP GGATGCTC 60.0% identity Open · Scan
M00953_2.00 NN 70-40% CisBP ATCTATAT 60.0% identity Open · Scan
M00958_2.00 NN 70-40% CisBP CGGCATCCC 60.0% identity Open · Scan
M00959_2.00 NN 70-40% CisBP GCCCTCCC 60.0% identity Open · Scan
M00960_2.00 NN 70-40% CisBP TGCATCCC 60.0% identity Open · Scan
M07687_2.00 NN 70-40% CisBP ACAAATAAGGTTCTTGTGCCCCCTGCT 59.8% identity Open · Scan
M00945_2.00 NN 70-40% CisBP CACCGCAC 59.7% identity Open · Scan
M08381_2.00 NN 70-40% CisBP ACATTTTGTCCTCCTAGTCCT 59.5% identity Open · Scan
M08375_2.00 NN 70-40% CisBP TTCCCCATTGGCTACTGCACCGGTCCT 59.2% identity Open · Scan
M02924_2.00 NN 70-40% CisBP AGTGTTAACAGAACACCT 58.9% identity Open · Scan
M00943_2.00 NN 70-40% CisBP CCCGCTGC 58.8% identity Open · Scan
M00948_2.00 NN 70-40% CisBP GCAGCACC 58.8% identity Open · Scan
MA1124.1 NN 70-40% JASPAR CATTCATTCATTC 58.6% identity Open · Scan
M08921_2.00 NN 70-40% CisBP CCTCATTCTTCTTGGACATG 58.5% identity Open · Scan
M07565_2.00 NN 70-40% CisBP CCTCTGGGGGCTCGTCCA 58.2% identity Open · Scan
M08325_2.00 NN 70-40% CisBP TTTTTTTTT 57.9% identity Open · Scan
M00782_2.00 NN 70-40% CisBP AGTGTGCGCTA 57.8% identity Open · Scan
M07761_2.00 NN 70-40% CisBP CTGATTATTCACCCA 57.8% identity Open · Scan
M08985_2.00 NN 70-40% CisBP TGAGGACCTACTGTGTGCC 57.8% identity Open · Scan
M08934_2.00 NN 70-40% CisBP GCTGTACCTGCTTATTAGGC 57.5% identity Open · Scan
M08355_2.00 NN 70-40% CisBP GCGAACTCCTATTCATCC 57.2% identity Open · Scan
MA1599.1 NN 70-40% JASPAR CGGGCCAAGCCCCTAT 56.9% identity Open · Scan
M04650_2.00 NN 70-40% CisBP GCATAACTGCCCCGCTGCC 56.2% identity Open · Scan
M04465_2.00 NN 70-40% CisBP GTGATTCTTATCTTATCCTT 55.7% identity Open · Scan
M08267_2.00 NN 70-40% CisBP CAGTTTCATTTTCC 55.4% identity Open · Scan
M08329_2.00 NN 70-40% CisBP GCTGCATAGTATTCC 55.1% identity Open · Scan
M08395_2.00 NN 70-40% CisBP GCTGCCTACTCTTCC 55.1% identity Open · Scan
M07753_2.00 NN 70-40% CisBP TGCATTCCTTGGCTTGTG 54.6% identity Open · Scan
MA1602.1 NN 70-40% JASPAR CGTCTACACGGG 54.5% identity Open · Scan
M04387_2.00 NN 70-40% CisBP CGTGCTCCCC 54.4% identity Open · Scan
M08334_2.00 NN 70-40% CisBP TTTGTTTTTTTCTGATTGCTTTTTACTTAT 54.4% identity Open · Scan
M07767_2.00 NN 70-40% CisBP AAAAACCCCAGA 54.3% identity Open · Scan
M08949_2.00 NN 70-40% CisBP TTCTATTTCTTCTTGTGTCA 54.1% identity Open · Scan
M07581_2.00 NN 70-40% CisBP TCCCCTGTGCTTCTCTCCCCT 53.9% identity Open · Scan
M07578_2.00 NN 70-40% CisBP CAACTCTCC 53.3% identity Open · Scan
M08901_2.00 NN 70-40% CisBP CCAGTTCACACC 53.1% identity Open · Scan
M07658_2.00 NN 70-40% CisBP CCGCCGCAGCCGCCG 53.0% identity Open · Scan
M01181_2.00 NN 70-40% CisBP GCGCATCCCC 52.7% identity Open · Scan
M04598_2.00 NN 70-40% CisBP CGCTAACTCTCCACA 52.6% identity Open · Scan
M07727_2.00 NN 70-40% CisBP CGCCGCCTCCCC 52.3% identity Open · Scan
MA1596.1 NN 70-40% JASPAR GCCTCAGCCTCCCGAG 52.3% identity Open · Scan
M07666_2.00 NN 70-40% CisBP ATCTAGCCCCTGCCTACC 52.2% identity Open · Scan
M06179_2.00 NN 70-40% CisBP TAAGCCTATAGA 51.8% identity Open · Scan
M04613_2.00 NN 70-40% CisBP CTCATGTGCTAATTACAAA 51.6% identity Open · Scan
M04621_2.00 NN 70-40% CisBP AGCAATTCCGCTCA 51.4% identity Open · Scan
M04505_2.00 NN 70-40% CisBP AGCTTTTCCCACAC 51.3% identity Open · Scan
M08254_2.00 NN 70-40% CisBP CTGCCCTGGGACTTT 51.3% identity Open · Scan
M08255_2.00 NN 70-40% CisBP CTCTTCCGGT 51.1% identity Open · Scan
M08908_2.00 NN 70-40% CisBP GCTGCTGCTTCTGCTG 51.1% identity Open · Scan
M07562_2.00 NN 70-40% CisBP GAAAAAAAC 50.9% identity Open · Scan
M04536_2.00 NN 70-40% CisBP ACGTAACCCGATACC 50.7% identity Open · Scan
M08263_2.00 NN 70-40% CisBP ATCTCGGCACTTTGGGAGGCCA 50.7% identity Open · Scan
MA1656.1 NN 70-40% JASPAR CCAAGCCCAACCAG 50.7% identity Open · Scan
M07648_2.00 NN 70-40% CisBP GCTTGCAAAAAAAATTTAACTCCCAGCTC 50.6% identity Open · Scan
M07649_2.00 NN 70-40% CisBP CCCCCCCCCCCCTCAGGAATGCC 50.6% identity Open · Scan
M08330_2.00 NN 70-40% CisBP TGGGTGCCGGACTGCTGTTCC 50.4% identity Open · Scan
M07566_2.00 NN 70-40% CisBP TCAAACCATCCTTGC 50.3% identity Open · Scan
M00786_2.00 NN 70-40% CisBP TATATATAT 50.0% identity Open · Scan
M06169_2.00 NN 70-40% CisBP GCCACGCCCAAC 50.0% identity Open · Scan
M08314_2.00 NN 70-40% CisBP ATTCATCAAGGTCCTCAACAATGG 50.0% identity Open · Scan
ModCRE6
MotifPredictionSourceDNA bindingSupportLogoActions
DIMER_tr_B4DU56_B4DU56_HUMAN:166:217_1llm_D_1 ModCRE Homology model ATCCGCGCGATT Region 166-217 · 1 3D model Open · Scan
TFS_tr_B4DU56_B4DU56_HUMAN:168:466_7w1m_H_1 ModCRE Homology model GTCGGGCCGGGCTGGGTTCGCGTCCCCCCGGGTGGGGGCAATT Region 168-466 · 1 3D model Open · Scan
TFS_tr_B4DU56_B4DU56_HUMAN:223:499_5v3j_E_1 ModCRE Homology model CTGGAGGATTCACCCCCCGGGGTGGG Region 223-499 · 1 3D model Open · Scan
TFS_tr_B4DU56_B4DU56_HUMAN:223:499_5v3m_C_1 ModCRE Homology model CCCTCCCCCCCCCCCTTTGGCGTTCT Region 223-499 · 1 3D model Open · Scan
TFS_tr_B4DU56_B4DU56_HUMAN:333:611_5wjq_D_1 ModCRE Homology model CGGGCCATCCCGGCCCCCCCGCCGCCCC Region 333-611 · 1 3D model Open · Scan
TFS_tr_B4DU56_B4DU56_HUMAN:373:526_2i13_A_1 ModCRE Homology model ACCTTTCTTCTCCATATTTGA Region 373-526 · 1 3D model Open · Scan

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 616 aa
166-611

Region 166-611 6 PWM

Residues
446 aa
Domains
PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type
3D models
6 active PDBs · 6 summary rows
Templates
1LLM, 2I13, 5V3J, 5V3M, 5WJQ, 7W1M
Sources
Predicted = Low
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
6 active PDB models 6 summary rows
Region 166-6116 models · 6 summary rows
Actions
Predicted = Low DIMER_tr_B4DU56_B4DU56_HUMAN:166:217_1llm_D_1 1llm 166-217 View model · PDB
Predicted = Low TFS_tr_B4DU56_B4DU56_HUMAN:168:466_7w1m_H_1 7w1m 168-466 View model · PDB
Predicted = Low TFS_tr_B4DU56_B4DU56_HUMAN:223:499_5v3j_E_1 5v3j 223-499 View model · PDB
Predicted = Low TFS_tr_B4DU56_B4DU56_HUMAN:223:499_5v3m_C_1 5v3m 223-499 View model · PDB
Predicted = Low TFS_tr_B4DU56_B4DU56_HUMAN:333:611_5wjq_D_1 5wjq 333-611 View model · PDB
Predicted = Low TFS_tr_B4DU56_B4DU56_HUMAN:373:526_2i13_A_1 2i13 373-526 View model · PDB

Model-summary evidence imported for this region.

RankTemplateDomainN-tailsC-tailsChainsIdentity / similarityCoverageModel file
1 5wjq 165:611 333 611 P:D · DNA:A,B 55.6% / 74.2% 99 View · PDB TFS_tr_B4DU56_B4DU56_HUMAN:333:611_5wjq_D_1
4 2i13 165:611 373 526 P:A · DNA:C,D 53.9% / 69.5% 100 View · PDB TFS_tr_B4DU56_B4DU56_HUMAN:373:526_2i13_A_1
2 5v3m 165:611 223 499 P:C · DNA:A,B 53.1% / 72.2% 100 View · PDB TFS_tr_B4DU56_B4DU56_HUMAN:223:499_5v3m_C_1
3 5v3j 165:611 223 499 P:E · DNA:A,B 53.1% / 72.2% 100 View · PDB TFS_tr_B4DU56_B4DU56_HUMAN:223:499_5v3j_E_1
1 1llm 165:611 166,166 217,217 P:C,D · DNA:A,B 46.2% / 63.5% 59,61 View · PDB DIMER_tr_B4DU56_B4DU56_HUMAN:166:217_1llm_D_1
5 7w1m 165:611 168 466 P:H · DNA:F,G 35.4% / 50.3% 92 View · PDB TFS_tr_B4DU56_B4DU56_HUMAN:168:466_7w1m_H_1

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
3-43PF01352KRAB boxNo overlap with loaded model regions
168-190PF00096Zinc finger, C2H2 typeoverlaps 166-611
196-218PF00096Zinc finger, C2H2 typeoverlaps 166-611
224-246PF00096Zinc finger, C2H2 typeoverlaps 166-611
252-274PF00096Zinc finger, C2H2 typeoverlaps 166-611
280-302PF00096Zinc finger, C2H2 typeoverlaps 166-611
308-330PF00096Zinc finger, C2H2 typeoverlaps 166-611
336-358PF00096Zinc finger, C2H2 typeoverlaps 166-611
364-386PF00096Zinc finger, C2H2 typeoverlaps 166-611
392-414PF00096Zinc finger, C2H2 typeoverlaps 166-611
420-442PF00096Zinc finger, C2H2 typeoverlaps 166-611
448-470PF00096Zinc finger, C2H2 typeoverlaps 166-611
476-498PF00096Zinc finger, C2H2 typeoverlaps 166-611
504-526PF00096Zinc finger, C2H2 typeoverlaps 166-611
532-554PF00096Zinc finger, C2H2 typeoverlaps 166-611
560-582PF00096Zinc finger, C2H2 typeoverlaps 166-611
588-610PF00096Zinc finger, C2H2 typeoverlaps 166-611