Region 7-61 5 PWM
- Residues
- 55 aa
- Domains
- PF01429 · Methyl-CpG binding domain
- 3D models
- 5 active PDBs · 5 summary rows
- Templates
- 5BT2, 6C1Y, 6OGJ, 6OGK
- Sources
- Predicted = Low
Transcription factor
B4DUR3
Methyl-CpG-binding domain protein 1 (Methyl-CpG-binding protein MBD1)
Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 535 aa
Motif Prediction
Only entries with a generated matrix are shown here.
Known0
No generated PWM in this category.
Nearest Neighbor (>70%)0
No generated PWM in this category.
Nearest Neighbor (70% - 40%)0
No generated PWM in this category.
ModCRE5
| Motif | Prediction | Source | DNA binding | Support | Logo | Actions |
|---|---|---|---|---|---|---|
| TFS_tr_B4DUR3_B4DUR3_HUMAN:7:61_5bt2_A_1 | ModCRE | Homology model | CCCCCACGGTTGG | Region 7-61 · 1 3D model | Open · Scan | |
| TFS_tr_B4DUR3_B4DUR3_HUMAN:7:61_6c1y_A_1 | ModCRE | Homology model | CATCCTTGGCG | Region 7-61 · 1 3D model | Open · Scan | |
| TFS_tr_B4DUR3_B4DUR3_HUMAN:7:61_6ogj_A_1 | ModCRE | Homology model | CACCGTATAGG | Region 7-61 · 1 3D model | Open · Scan | |
| TFS_tr_B4DUR3_B4DUR3_HUMAN:7:61_6ogj_B_1 | ModCRE | Homology model | TACCCCC | Region 7-61 · 1 3D model | Open · Scan | |
| TFS_tr_B4DUR3_B4DUR3_HUMAN:7:61_6ogk_A_1 | ModCRE | Homology model | CCTTAAGGG | Region 7-61 · 1 3D model | Open · Scan |
Model-supported DNA-binding regions
Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.
1
535 aa
7-61
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
5 active PDB models
5 summary rows
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
Region 7-615 models · 5 summary rows
| Actions | ||||
|---|---|---|---|---|
| Predicted = Low | TFS_tr_B4DUR3_B4DUR3_HUMAN:7:61_5bt2_A_1 | 5bt2 | 7-61 | View model · PDB |
| Predicted = Low | TFS_tr_B4DUR3_B4DUR3_HUMAN:7:61_6c1y_A_1 | 6c1y | 7-61 | View model · PDB |
| Predicted = Low | TFS_tr_B4DUR3_B4DUR3_HUMAN:7:61_6ogj_A_1 | 6ogj | 7-61 | View model · PDB |
| Predicted = Low | TFS_tr_B4DUR3_B4DUR3_HUMAN:7:61_6ogj_B_1 | 6ogj | 7-61 | View model · PDB |
| Predicted = Low | TFS_tr_B4DUR3_B4DUR3_HUMAN:7:61_6ogk_A_1 | 6ogk | 7-61 | View model · PDB |
Model-summary evidence imported for this region.
| Rank | Template | Domain | N-tails | C-tails | Chains | Identity / similarity | Coverage | Model file |
|---|---|---|---|---|---|---|---|---|
| 1 | 6ogj | 7:61 | 7 | 61 | P:A · DNA:C,D | 43.6% / 52.7% | 72 | View · PDB TFS_tr_B4DUR3_B4DUR3_HUMAN:7:61_6ogj_A_1 |
| 2 | 6ogj | 7:61 | 7 | 61 | P:B · DNA:C,D | 43.6% / 52.7% | 67 | View · PDB TFS_tr_B4DUR3_B4DUR3_HUMAN:7:61_6ogj_B_1 |
| 3 | 6ogk | 7:61 | 7 | 61 | P:A · DNA:C,D | 43.6% / 52.7% | 72 | View · PDB TFS_tr_B4DUR3_B4DUR3_HUMAN:7:61_6ogk_A_1 |
| 4 | 6c1y | 7:61 | 7 | 61 | P:A · DNA:C,D | 43.6% / 52.7% | 77 | View · PDB TFS_tr_B4DUR3_B4DUR3_HUMAN:7:61_6c1y_A_1 |
| 5 | 5bt2 | 7:61 | 7 | 61 | P:A · DNA:B,C | 43.6% / 52.7% | 77 | View · PDB TFS_tr_B4DUR3_B4DUR3_HUMAN:7:61_5bt2_A_1 |
View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.
Domains
Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.
| Residues | PFAM | Domain | Used by prediction region? |
|---|---|---|---|
| 2-70 | PF01429 | Methyl-CpG binding domain | overlaps 7-61 |
| 169-215 | PF02008 | CXXC zinc finger domain | No overlap with loaded model regions |
| 219-262 | PF02008 | CXXC zinc finger domain | No overlap with loaded model regions |