ModCRE DB

Transcription factor

B4DWJ5

cDNA FLJ58292, moderately similar to Homo sapiens zinc finger protein 134 (clone pHZ-15) (ZNF134), mRNA

Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 377 aa

52 Generated PWM 6 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)47
MotifPredictionSourceDNA bindingSupportLogoActions
M04611_2.00 NN 70-40% CisBP CTTTCGGACAC 62.7% identity Open · Scan
M00953_2.00 NN 70-40% CisBP ATCTATAT 62.3% identity Open · Scan
M00959_2.00 NN 70-40% CisBP GCCCTCCC 62.3% identity Open · Scan
M00943_2.00 NN 70-40% CisBP CCCGCTGC 61.1% identity Open · Scan
M00960_2.00 NN 70-40% CisBP TGCATCCC 61.1% identity Open · Scan
M04653_2.00 NN 70-40% CisBP GGTACGGTTGTCCATGTTGCAA 60.9% identity Open · Scan
M00950_2.00 NN 70-40% CisBP GCAGCCCA 60.0% identity Open · Scan
M00952_2.00 NN 70-40% CisBP GGATGCTC 60.0% identity Open · Scan
M00944_2.00 NN 70-40% CisBP TCGCTATAA 58.8% identity Open · Scan
M00948_2.00 NN 70-40% CisBP GCAGCACC 58.8% identity Open · Scan
M00958_2.00 NN 70-40% CisBP CGGCATCCC 58.8% identity Open · Scan
M08392_2.00 NN 70-40% CisBP CTTCACCTGCTGAGG 57.9% identity Open · Scan
MA1124.1 NN 70-40% JASPAR CATTCATTCATTC 57.7% identity Open · Scan
M00939_2.00 NN 70-40% CisBP CCACCTCA 57.6% identity Open · Scan
M00955_2.00 NN 70-40% CisBP ACGTCCTCT 57.6% identity Open · Scan
M02924_2.00 NN 70-40% CisBP AGTGTTAACAGAACACCT 57.5% identity Open · Scan
M08985_2.00 NN 70-40% CisBP TGAGGACCTACTGTGTGCC 57.3% identity Open · Scan
M04621_2.00 NN 70-40% CisBP AGCAATTCCGCTCA 55.7% identity Open · Scan
MA1589.1 NN 70-40% JASPAR TAGGAGTGGAATTGCTGGGTC 55.7% identity Open · Scan
M04613_2.00 NN 70-40% CisBP CTCATGTGCTAATTACAAA 55.4% identity Open · Scan
M04465_2.00 NN 70-40% CisBP GTGATTCTTATCTTATCCTT 55.1% identity Open · Scan
M07566_2.00 NN 70-40% CisBP TCAAACCATCCTTGC 54.9% identity Open · Scan
M08917_2.00 NN 70-40% CisBP GCTGAGCCATGTGGGGTGCT 54.9% identity Open · Scan
M04387_2.00 NN 70-40% CisBP CGTGCTCCCC 54.6% identity Open · Scan
MA1600.1 NN 70-40% JASPAR ATACAGTCCACCCCTTTA 54.0% identity Open · Scan
M07578_2.00 NN 70-40% CisBP CAACTCTCC 53.3% identity Open · Scan
M04650_2.00 NN 70-40% CisBP GCATAACTGCCCCGCTGCC 53.2% identity Open · Scan
M08901_2.00 NN 70-40% CisBP CCAGTTCACACC 53.2% identity Open · Scan
M07699_2.00 NN 70-40% CisBP GGTTTAT 52.9% identity Open · Scan
M06179_2.00 NN 70-40% CisBP TAAGCCTATAGA 52.8% identity Open · Scan
M07567_2.00 NN 70-40% CisBP CCACTCCACTCA 52.2% identity Open · Scan
M08325_2.00 NN 70-40% CisBP TTTTTTTTT 52.2% identity Open · Scan
M00945_2.00 NN 70-40% CisBP CACCGCAC 51.7% identity Open · Scan
M08291_2.00 NN 70-40% CisBP AATCCAGCCCTAGACTCTCCC 51.7% identity Open · Scan
MA1602.1 NN 70-40% JASPAR CGTCTACACGGG 51.7% identity Open · Scan
M04536_2.00 NN 70-40% CisBP ACGTAACCCGATACC 51.5% identity Open · Scan
M07691_2.00 NN 70-40% CisBP CCTGCAGCCACCTTGGCCTTG 51.5% identity Open · Scan
M00786_2.00 NN 70-40% CisBP TATATATAT 51.3% identity Open · Scan
M07600_2.00 NN 70-40% CisBP GCATTAGC 51.2% identity Open · Scan
M08254_2.00 NN 70-40% CisBP CTGCCCTGGGACTTT 51.2% identity Open · Scan
M04590_2.00 NN 70-40% CisBP TGCGCTAACCATTGC 51.1% identity Open · Scan
M04505_2.00 NN 70-40% CisBP AGCTTTTCCCACAC 51.0% identity Open · Scan
M07582_2.00 NN 70-40% CisBP TCCCTG 50.8% identity Open · Scan
M04598_2.00 NN 70-40% CisBP CGCTAACTCTCCACA 50.4% identity Open · Scan
MA1656.1 NN 70-40% JASPAR CCAAGCCCAACCAG 50.2% identity Open · Scan
M00769_2.00 NN 70-40% CisBP ACTCCCCC 50.0% identity Open · Scan
M07686_2.00 NN 70-40% CisBP TAGCTTGTTTCCAGCCAC 50.0% identity Open · Scan
ModCRE5
MotifPredictionSourceDNA bindingSupportLogoActions
DIMER_tr_B4DWJ5_B4DWJ5_HUMAN:154:203_1llm_D_1 ModCRE Homology model TTTCGCGCGCGA Region 154-203 · 1 3D model Open · Scan
TFS_tr_B4DWJ5_B4DWJ5_HUMAN:148:377_5v3j_E_1 ModCRE Homology model GTACCGGTTTGGACCCCCTGGGG Region 148-377 · 1 3D model Open · Scan
TFS_tr_B4DWJ5_B4DWJ5_HUMAN:148:377_5v3m_C_1 ModCRE Homology model GGGCCCTCCGACCCCCCCCGCCGG Region 148-377 · 1 3D model Open · Scan
TFS_tr_B4DWJ5_B4DWJ5_HUMAN:151:377_5wjq_D_1 ModCRE Homology model CCCCCCCACGTCGCCCCCTGTTGG Region 151-377 · 1 3D model Open · Scan
TFS_tr_B4DWJ5_B4DWJ5_HUMAN:219:372_2i13_A_1 ModCRE Homology model CTCAGTTACTAGTACTAAGCC Region 219-372 · 1 3D model Open · Scan

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 377 aa
139-377

Region 139-377 5 PWM

Residues
239 aa
Domains
PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type
3D models
6 active PDBs · 6 summary rows
Templates
1LLM, 2I13, 5V3J, 5V3M, 5WJQ, 7W1M
Sources
Predicted = Low
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
6 active PDB models 6 summary rows
Region 139-3776 models · 6 summary rows
Actions
Predicted = Low DIMER_tr_B4DWJ5_B4DWJ5_HUMAN:154:203_1llm_D_1 1llm 154-203 View model · PDB
Predicted = Low TFS_tr_B4DWJ5_B4DWJ5_HUMAN:139:377_7w1m_H_1 7w1m 139-377 View model · PDB
Predicted = Low TFS_tr_B4DWJ5_B4DWJ5_HUMAN:148:377_5v3j_E_1 5v3j 148-377 View model · PDB
Predicted = Low TFS_tr_B4DWJ5_B4DWJ5_HUMAN:148:377_5v3m_C_1 5v3m 148-377 View model · PDB
Predicted = Low TFS_tr_B4DWJ5_B4DWJ5_HUMAN:151:377_5wjq_D_1 5wjq 151-377 View model · PDB
Predicted = Low TFS_tr_B4DWJ5_B4DWJ5_HUMAN:219:372_2i13_A_1 2i13 219-372 View model · PDB

Model-summary evidence imported for this region.

RankTemplateDomainN-tailsC-tailsChainsIdentity / similarityCoverageModel file
4 2i13 139:377 219 372 P:A · DNA:C,D 53.9% / 66.2% 100 View · PDB TFS_tr_B4DWJ5_B4DWJ5_HUMAN:219:372_2i13_A_1
1 5v3m 139:377 148 377 P:C · DNA:A,B 50.9% / 66.5% 83 View · PDB TFS_tr_B4DWJ5_B4DWJ5_HUMAN:148:377_5v3m_C_1
2 5v3j 139:377 148 377 P:E · DNA:A,B 50.9% / 66.5% 83 View · PDB TFS_tr_B4DWJ5_B4DWJ5_HUMAN:148:377_5v3j_E_1
3 5wjq 139:377 151 377 P:D · DNA:A,B 50.2% / 66.1% 80 View · PDB TFS_tr_B4DWJ5_B4DWJ5_HUMAN:151:377_5wjq_D_1
1 1llm 139:377 154,154 203,203 P:C,D · DNA:A,B 42.0% / 60.0% 57,58 View · PDB DIMER_tr_B4DWJ5_B4DWJ5_HUMAN:154:203_1llm_D_1
5 7w1m 139:377 139 377 P:H · DNA:F,G 34.8% / 48.0% 74 View · PDB TFS_tr_B4DWJ5_B4DWJ5_HUMAN:139:377_7w1m_H_1

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
154-176PF00096Zinc finger, C2H2 typeoverlaps 139-377
182-204PF00096Zinc finger, C2H2 typeoverlaps 139-377
210-232PF00096Zinc finger, C2H2 typeoverlaps 139-377
238-260PF00096Zinc finger, C2H2 typeoverlaps 139-377
266-288PF00096Zinc finger, C2H2 typeoverlaps 139-377
295-316PF00096Zinc finger, C2H2 typeoverlaps 139-377
322-344PF00096Zinc finger, C2H2 typeoverlaps 139-377
350-372PF00096Zinc finger, C2H2 typeoverlaps 139-377