ModCRE DB

Transcription factor

B4DWM7

cDNA FLJ54315, moderately similar to Krueppel-related zinc finger protein 1

Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 438 aa

78 Generated PWM 1 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)1
MotifPredictionSourceDNA bindingSupportLogoActions
M07662_2.00 NN 70+% CisBP CCTGTGTCCTCCCTGGTCCCC 72.7% identity Open · Scan
Nearest Neighbor (70% - 40%)77
MotifPredictionSourceDNA bindingSupportLogoActions
M04387_2.00 NN 70-40% CisBP CGTGCTCCCC 61.4% identity Open · Scan
M00953_2.00 NN 70-40% CisBP ATCTATAT 61.1% identity Open · Scan
M00950_2.00 NN 70-40% CisBP GCAGCCCA 60.0% identity Open · Scan
M00960_2.00 NN 70-40% CisBP TGCATCCC 60.0% identity Open · Scan
M00952_2.00 NN 70-40% CisBP GGATGCTC 58.8% identity Open · Scan
M00958_2.00 NN 70-40% CisBP CGGCATCCC 58.8% identity Open · Scan
M00774_2.00 NN 70-40% CisBP TTAGTATACACAAGT 57.8% identity Open · Scan
M00943_2.00 NN 70-40% CisBP CCCGCTGC 57.6% identity Open · Scan
M00944_2.00 NN 70-40% CisBP TCGCTATAA 57.6% identity Open · Scan
M00948_2.00 NN 70-40% CisBP GCAGCACC 57.6% identity Open · Scan
M00959_2.00 NN 70-40% CisBP GCCCTCCC 57.6% identity Open · Scan
M04611_2.00 NN 70-40% CisBP CTTTCGGACAC 57.4% identity Open · Scan
M07688_2.00 NN 70-40% CisBP GAGCCCCAAGCA 57.2% identity Open · Scan
M07593_2.00 NN 70-40% CisBP AGATGAAGTCACCCCTCTTAC 56.6% identity Open · Scan
M04515_2.00 NN 70-40% CisBP TATGCTATAACAAGCAGCCCC 55.0% identity Open · Scan
M08245_2.00 NN 70-40% CisBP TGGTGCCTTATTCCC 55.0% identity Open · Scan
M07646_2.00 NN 70-40% CisBP CTTTTTTTT 54.8% identity Open · Scan
M07605_2.00 NN 70-40% CisBP TATTTTTTTTTATTTTTTTTTTTTTTTTTT 54.6% identity Open · Scan
MA1124.1 NN 70-40% JASPAR CATTCATTCATTC 54.3% identity Open · Scan
M00939_2.00 NN 70-40% CisBP CCACCTCA 54.1% identity Open · Scan
M02924_2.00 NN 70-40% CisBP AGTGTTAACAGAACACCT 53.7% identity Open · Scan
M07689_2.00 NN 70-40% CisBP ACCCAGGCTCCTTCCATCTTGTGGCTC 53.3% identity Open · Scan
M08247_2.00 NN 70-40% CisBP AAAAATAACAAACGG 53.3% identity Open · Scan
M08371_2.00 NN 70-40% CisBP CCAGACTTGTCCTCT 53.3% identity Open · Scan
M08375_2.00 NN 70-40% CisBP TTCCCCATTGGCTACTGCACCGGTCCT 53.3% identity Open · Scan
MA1594.1 NN 70-40% JASPAR AGGGGACATCACTACAGATCCCAC 53.3% identity Open · Scan
M07581_2.00 NN 70-40% CisBP TCCCCTGTGCTTCTCTCCCCT 53.1% identity Open · Scan
M08329_2.00 NN 70-40% CisBP GCTGCATAGTATTCC 53.1% identity Open · Scan
MA1587.1 NN 70-40% JASPAR CCTCGACCTCCTGA 53.1% identity Open · Scan
M07579_2.00 NN 70-40% CisBP CATCTCCAGGA 52.9% identity Open · Scan
M08252_2.00 NN 70-40% CisBP CCGGCTCCAGCACCC 52.9% identity Open · Scan
M04621_2.00 NN 70-40% CisBP AGCAATTCCGCTCA 52.5% identity Open · Scan
M08267_2.00 NN 70-40% CisBP CAGTTTCATTTTCC 52.5% identity Open · Scan
M08279_2.00 NN 70-40% CisBP CCTCCCTCC 52.5% identity Open · Scan
M08944_2.00 NN 70-40% CisBP TACCATGCTGTTTTGATTAC 52.5% identity Open · Scan
MA1589.1 NN 70-40% JASPAR TAGGAGTGGAATTGCTGGGTC 52.5% identity Open · Scan
M07601_2.00 NN 70-40% CisBP CAGATGCCGGCACCATGCTTC 52.3% identity Open · Scan
M07700_2.00 NN 70-40% CisBP ATGTTGTGAGGAAGCCCA 52.3% identity Open · Scan
M08255_2.00 NN 70-40% CisBP CTCTTCCGGT 52.3% identity Open · Scan
M04598_2.00 NN 70-40% CisBP CGCTAACTCTCCACA 52.1% identity Open · Scan
M08292_2.00 NN 70-40% CisBP TGTATTCCTTGTCATGTGTGG 52.1% identity Open · Scan
MA0130.1 NN 70-40% JASPAR ATCCAC 52.1% identity Open · Scan
M00031_2.00 NN 70-40% CisBP TACCCCGCAC 52.0% identity Open · Scan
M01537_2.00 NN 70-40% CisBP TACCCCGCAC 52.0% identity Open · Scan
M08325_2.00 NN 70-40% CisBP TTTTTTTTT 52.0% identity Open · Scan
M07706_2.00 NN 70-40% CisBP GTCTTTGAGAGGGCCCAGATGTTGGACTTA 51.8% identity Open · Scan
M08395_2.00 NN 70-40% CisBP GCTGCCTACTCTTCC 51.8% identity Open · Scan
M00955_2.00 NN 70-40% CisBP ACGTCCTCT 51.7% identity Open · Scan
M03671_2.00 NN 70-40% CisBP ATTACCATACAAGTGCAC 51.6% identity Open · Scan
M08263_2.00 NN 70-40% CisBP ATCTCGGCACTTTGGGAGGCCA 51.5% identity Open · Scan
M01883_2.00 NN 70-40% CisBP TGCCCCTGA 51.4% identity Open · Scan
M10303_2.00 NN 70-40% CisBP TACTGGGAATACC 51.4% identity Open · Scan
MA0528.1 NN 70-40% JASPAR GGAGGAGGAGGGGGAGGAGGA 51.4% identity Open · Scan
M00609_2.00 NN 70-40% CisBP GGAAGCCCTA 51.3% identity Open · Scan
M07666_2.00 NN 70-40% CisBP ATCTAGCCCCTGCCTACC 51.3% identity Open · Scan
M08274_2.00 NN 70-40% CisBP TTACTTGCAGCCCAACGCATTCCTAAC 51.2% identity Open · Scan
M07610_2.00 NN 70-40% CisBP CCTTCTTCCTCCCCCCTGCCCACC 50.9% identity Open · Scan
M00782_2.00 NN 70-40% CisBP AGTGTGCGCTA 50.8% identity Open · Scan
M08860_2.00 NN 70-40% CisBP TCTTATAAGGGCACTAATCCCATT 50.8% identity Open · Scan
M07588_2.00 NN 70-40% CisBP TCCTTCCCTCTTTCC 50.6% identity Open · Scan
M07587_2.00 NN 70-40% CisBP CCCCCTCCCCAGTCGAGCCCCCGC 50.4% identity Open · Scan
M07590_2.00 NN 70-40% CisBP TTTTTTTCTTTTATTTTTTTTTTTTTTTTTTTT 50.4% identity Open · Scan
M07600_2.00 NN 70-40% CisBP GCATTAGC 50.4% identity Open · Scan
M07777_2.00 NN 70-40% CisBP GCCAATTTCCGTGGTGTAAAT 50.4% identity Open · Scan
M08355_2.00 NN 70-40% CisBP GCGAACTCCTATTCATCC 50.4% identity Open · Scan
M07712_2.00 NN 70-40% CisBP ACATTTTTTTAATCTAAAAAAACATTTACA 50.2% identity Open · Scan
M00779_2.00 NN 70-40% CisBP GCCACGCCCA 50.0% identity Open · Scan
M00909_2.00 NN 70-40% CisBP AGGACCCTGT 50.0% identity Open · Scan
M03583_2.00 NN 70-40% CisBP GGATGCTGTG 50.0% identity Open · Scan
M04613_2.00 NN 70-40% CisBP CTCATGTGCTAATTACAAA 50.0% identity Open · Scan
M07683_2.00 NN 70-40% CisBP GTGGGAAAGCCT 50.0% identity Open · Scan
M07729_2.00 NN 70-40% CisBP CCAGACTGCCTGCCAAAACCCCCT 50.0% identity Open · Scan
M07753_2.00 NN 70-40% CisBP TGCATTCCTTGGCTTGTG 50.0% identity Open · Scan
M08311_2.00 NN 70-40% CisBP CTGGAACAGAAGGGGCGA 50.0% identity Open · Scan
M08540_2.00 NN 70-40% CisBP CCCCT 50.0% identity Open · Scan
M08867_2.00 NN 70-40% CisBP CACCCCCTG 50.0% identity Open · Scan
MA1601.1 NN 70-40% JASPAR ATGTGGGAAA 50.0% identity Open · Scan
ModCRE0

No generated PWM in this category.

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 438 aa
195-437

Region 195-437 0 PWM

Residues
243 aa
Domains
PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type
3D models
1 active PDB
Templates
5WJQ
Sources
Structure model
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
1 active PDB model
Region 195-4371 model
Actions
Predicted = Low TFS_B4DWM7:195:437_5wjq_D_1 5wjq 195-437 View model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
53-70PF21225C2H2-type zinc fingerNo overlap with loaded model regions
220-242PF00096Zinc finger, C2H2 typeoverlaps 195-437
248-270PF00096Zinc finger, C2H2 typeoverlaps 195-437
276-298PF00096Zinc finger, C2H2 typeoverlaps 195-437
304-326PF00096Zinc finger, C2H2 typeoverlaps 195-437
332-354PF00096Zinc finger, C2H2 typeoverlaps 195-437
358-380PF00096Zinc finger, C2H2 typeoverlaps 195-437
386-408PF00096Zinc finger, C2H2 typeoverlaps 195-437
414-436PF00096Zinc finger, C2H2 typeoverlaps 195-437