ModCRE DB

Transcription factor

B4DX96

cDNA FLJ57646, highly similar to Zinc finger protein 38

Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 448 aa

124 Generated PWM 6 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)119
MotifPredictionSourceDNA bindingSupportLogoActions
M00939_2.00 NN 70-40% CisBP CCACCTCA 67.8% identity Open · Scan
M00960_2.00 NN 70-40% CisBP TGCATCCC 64.7% identity Open · Scan
M00953_2.00 NN 70-40% CisBP ATCTATAT 64.2% identity Open · Scan
M00959_2.00 NN 70-40% CisBP GCCCTCCC 64.2% identity Open · Scan
MA1587.1 NN 70-40% JASPAR CCTCGACCTCCTGA 63.6% identity Open · Scan
M00952_2.00 NN 70-40% CisBP GGATGCTC 63.5% identity Open · Scan
M00958_2.00 NN 70-40% CisBP CGGCATCCC 63.5% identity Open · Scan
M00944_2.00 NN 70-40% CisBP TCGCTATAA 63.0% identity Open · Scan
M07638_2.00 NN 70-40% CisBP TGCAGCTCCCTGCCC 62.1% identity Open · Scan
M08977_2.00 NN 70-40% CisBP AAATCACAGC 60.7% identity Open · Scan
M07689_2.00 NN 70-40% CisBP ACCCAGGCTCCTTCCATCTTGTGGCTC 60.6% identity Open · Scan
M07700_2.00 NN 70-40% CisBP ATGTTGTGAGGAAGCCCA 60.6% identity Open · Scan
M07707_2.00 NN 70-40% CisBP TCCCGC 60.1% identity Open · Scan
M08252_2.00 NN 70-40% CisBP CCGGCTCCAGCACCC 60.1% identity Open · Scan
M00948_2.00 NN 70-40% CisBP GCAGCACC 59.5% identity Open · Scan
M00950_2.00 NN 70-40% CisBP GCAGCCCA 59.5% identity Open · Scan
M00955_2.00 NN 70-40% CisBP ACGTCCTCT 59.5% identity Open · Scan
M07635_2.00 NN 70-40% CisBP AAGTTTTCTTGTATTATATCT 59.5% identity Open · Scan
M08267_2.00 NN 70-40% CisBP CAGTTTCATTTTCC 59.5% identity Open · Scan
M08375_2.00 NN 70-40% CisBP TTCCCCATTGGCTACTGCACCGGTCCT 59.5% identity Open · Scan
M04653_2.00 NN 70-40% CisBP GGTACGGTTGTCCATGTTGCAA 59.3% identity Open · Scan
M07590_2.00 NN 70-40% CisBP TTTTTTTCTTTTATTTTTTTTTTTTTTTTTTTT 59.3% identity Open · Scan
M08934_2.00 NN 70-40% CisBP GCTGTACCTGCTTATTAGGC 59.0% identity Open · Scan
M00943_2.00 NN 70-40% CisBP CCCGCTGC 58.8% identity Open · Scan
M07762_2.00 NN 70-40% CisBP GCCGCGCACAGGCTTCTAGCC 58.7% identity Open · Scan
M00764_2.00 NN 70-40% CisBP GTCTACAC 58.6% identity Open · Scan
M00782_2.00 NN 70-40% CisBP AGTGTGCGCTA 58.5% identity Open · Scan
M07579_2.00 NN 70-40% CisBP CATCTCCAGGA 58.5% identity Open · Scan
M08355_2.00 NN 70-40% CisBP GCGAACTCCTATTCATCC 58.5% identity Open · Scan
M08944_2.00 NN 70-40% CisBP TACCATGCTGTTTTGATTAC 58.5% identity Open · Scan
M08329_2.00 NN 70-40% CisBP GCTGCATAGTATTCC 58.1% identity Open · Scan
M08279_2.00 NN 70-40% CisBP CCTCCCTCC 58.0% identity Open · Scan
M08371_2.00 NN 70-40% CisBP CCAGACTTGTCCTCT 58.0% identity Open · Scan
M07605_2.00 NN 70-40% CisBP TATTTTTTTTTATTTTTTTTTTTTTTTTTT 57.5% identity Open · Scan
M08357_2.00 NN 70-40% CisBP GAGCCTGCTACTGAGCCTGGG 57.5% identity Open · Scan
M04598_2.00 NN 70-40% CisBP CGCTAACTCTCCACA 57.4% identity Open · Scan
M07753_2.00 NN 70-40% CisBP TGCATTCCTTGGCTTGTG 57.3% identity Open · Scan
M07660_2.00 NN 70-40% CisBP CCGCGCCTACCTGAGGGCGCGGGCCTGGGG 57.2% identity Open · Scan
M07678_2.00 NN 70-40% CisBP CCCGCCCCCTCCTCCCCCTTCCCACCC 57.1% identity Open · Scan
M08342_2.00 NN 70-40% CisBP GCTCTGCCTCCCTCT 57.1% identity Open · Scan
M08309_2.00 NN 70-40% CisBP AAAAACCCCCCTGCAGAGCCCAGCCCT 57.0% identity Open · Scan
M08311_2.00 NN 70-40% CisBP CTGGAACAGAAGGGGCGA 57.0% identity Open · Scan
M08334_2.00 NN 70-40% CisBP TTTGTTTTTTTCTGATTGCTTTTTACTTAT 57.0% identity Open · Scan
M08373_2.00 NN 70-40% CisBP CCCCCTGGCTCTTCCTCT 57.0% identity Open · Scan
M04621_2.00 NN 70-40% CisBP AGCAATTCCGCTCA 56.6% identity Open · Scan
M05859_2.00 NN 70-40% CisBP GGCCACGCCCACT 56.6% identity Open · Scan
M06053_2.00 NN 70-40% CisBP GAAGCCATAACGGC 56.6% identity Open · Scan
M07588_2.00 NN 70-40% CisBP TCCTTCCCTCTTTCC 56.6% identity Open · Scan
MA0685.1 NN 70-40% JASPAR TAAGCCACGCCCCCTTT 56.6% identity Open · Scan
MA1589.1 NN 70-40% JASPAR TAGGAGTGGAATTGCTGGGTC 56.6% identity Open · Scan
M07581_2.00 NN 70-40% CisBP TCCCCTGTGCTTCTCTCCCCT 56.5% identity Open · Scan
M07610_2.00 NN 70-40% CisBP CCTTCTTCCTCCCCCCTGCCCACC 56.5% identity Open · Scan
M07714_2.00 NN 70-40% CisBP AGCCCATTGGGGCCTATGCCC 56.5% identity Open · Scan
M08256_2.00 NN 70-40% CisBP GTGCCTT 56.5% identity Open · Scan
M08347_2.00 NN 70-40% CisBP GCCCTGGGCAGC 56.5% identity Open · Scan
M08395_2.00 NN 70-40% CisBP GCTGCCTACTCTTCC 56.5% identity Open · Scan
M07649_2.00 NN 70-40% CisBP CCCCCCCCCCCCTCAGGAATGCC 56.0% identity Open · Scan
M07777_2.00 NN 70-40% CisBP GCCAATTTCCGTGGTGTAAAT 56.0% identity Open · Scan
M08255_2.00 NN 70-40% CisBP CTCTTCCGGT 56.0% identity Open · Scan
M08335_2.00 NN 70-40% CisBP AGTCGTTGTCTG 56.0% identity Open · Scan
M08292_2.00 NN 70-40% CisBP TGTATTCCTTGTCATGTGTGG 55.8% identity Open · Scan
M01474_2.00 NN 70-40% CisBP CGCCGATCAC 55.7% identity Open · Scan
M08247_2.00 NN 70-40% CisBP AAAAATAACAAACGG 55.5% identity Open · Scan
M08860_2.00 NN 70-40% CisBP TCTTATAAGGGCACTAATCCCATT 55.5% identity Open · Scan
MA1594.1 NN 70-40% JASPAR AGGGGACATCACTACAGATCCCAC 55.5% identity Open · Scan
M07746_2.00 NN 70-40% CisBP CAGCTGGCGCCCAACATGGGTCCC 55.3% identity Open · Scan
M08901_2.00 NN 70-40% CisBP CCAGTTCACACC 55.2% identity Open · Scan
M07712_2.00 NN 70-40% CisBP ACATTTTTTTAATCTAAAAAAACATTTACA 55.0% identity Open · Scan
M08300_2.00 NN 70-40% CisBP CTGCCCAATTCAT 55.0% identity Open · Scan
M05853_2.00 NN 70-40% CisBP CCACCTTTAGCCATATCT 54.8% identity Open · Scan
M07686_2.00 NN 70-40% CisBP TAGCTTGTTTCCAGCCAC 54.8% identity Open · Scan
M08325_2.00 NN 70-40% CisBP TTTTTTTTT 54.7% identity Open · Scan
M00149_2.00 NN 70-40% CisBP CGTACGCC 54.5% identity Open · Scan
M07600_2.00 NN 70-40% CisBP GCATTAGC 54.5% identity Open · Scan
M07761_2.00 NN 70-40% CisBP CTGATTATTCACCCA 54.5% identity Open · Scan
M08399_2.00 NN 70-40% CisBP TACTCTGGGGCCACATGACTC 54.5% identity Open · Scan
M08917_2.00 NN 70-40% CisBP GCTGAGCCATGTGGGGTGCT 54.3% identity Open · Scan
M07598_2.00 NN 70-40% CisBP CTGACAATACCAAGTGTTGAC 54.2% identity Open · Scan
M07567_2.00 NN 70-40% CisBP CCACTCCACTCA 54.0% identity Open · Scan
M08291_2.00 NN 70-40% CisBP AATCCAGCCCTAGACTCTCCC 54.0% identity Open · Scan
M08392_2.00 NN 70-40% CisBP CTTCACCTGCTGAGG 54.0% identity Open · Scan
M00608_2.00 NN 70-40% CisBP CCTGTTG 53.5% identity Open · Scan
M07601_2.00 NN 70-40% CisBP CAGATGCCGGCACCATGCTTC 53.5% identity Open · Scan
M07667_2.00 NN 70-40% CisBP CCGCACAGGCCCCCGGGCCCC 53.5% identity Open · Scan
M00777_2.00 NN 70-40% CisBP ACCGTTAT 53.3% identity Open · Scan
M07693_2.00 NN 70-40% CisBP CTCCTGTGTGTGCCTTGGCTG 53.3% identity Open · Scan
MA1107.1 NN 70-40% JASPAR GGCCACACCCACC 53.3% identity Open · Scan
M04475_2.00 NN 70-40% CisBP GATGCACGTACCGTGCCTCA 53.1% identity Open · Scan
M07699_2.00 NN 70-40% CisBP GGTTTAT 53.0% identity Open · Scan
M04505_2.00 NN 70-40% CisBP AGCTTTTCCCACAC 52.8% identity Open · Scan
M04590_2.00 NN 70-40% CisBP TGCGCTAACCATTGC 52.8% identity Open · Scan
MA1592.1 NN 70-40% JASPAR GGTATGAGTTCTCGCT 52.6% identity Open · Scan
M08366_2.00 NN 70-40% CisBP GTTTGCTGCTTACAA 52.5% identity Open · Scan
M07587_2.00 NN 70-40% CisBP CCCCCTCCCCAGTCGAGCCCCCGC 52.4% identity Open · Scan
M08386_2.00 NN 70-40% CisBP GCCTTAAAAGCTCAGCAC 52.2% identity Open · Scan
M08859_2.00 NN 70-40% CisBP CATTTTTTCCTCCTAGGCCT 52.1% identity Open · Scan
M07582_2.00 NN 70-40% CisBP TCCCTG 52.0% identity Open · Scan
M08283_2.00 NN 70-40% CisBP GACTTTTATTTT 51.8% identity Open · Scan
M00142_2.00 NN 70-40% CisBP GTGCTCCT 51.7% identity Open · Scan
M08367_2.00 NN 70-40% CisBP GGGGTGATGACCACTCTGGCTTCTTAC 51.7% identity Open · Scan
MA1154.1 NN 70-40% JASPAR CTTTCCCACAACACGAC 51.7% identity Open · Scan
M06039_2.00 NN 70-40% CisBP TATCTGAAA 51.5% identity Open · Scan
M07645_2.00 NN 70-40% CisBP CTCCTT 51.5% identity Open · Scan
M07770_2.00 NN 70-40% CisBP CTTGGACTT 51.5% identity Open · Scan
MA0056.1 NN 70-40% JASPAR TGGGGA 51.5% identity Open · Scan
MA1588.1 NN 70-40% JASPAR GAATTCTTGGTTGAC 51.5% identity Open · Scan
M00609_2.00 NN 70-40% CisBP GGAAGCCCTA 51.4% identity Open · Scan
M05844_2.00 NN 70-40% CisBP TCACCTGT 51.4% identity Open · Scan
MA0103.1 NN 70-40% JASPAR CACCTG 51.4% identity Open · Scan
MA0103.2 NN 70-40% JASPAR CCTCACCTG 51.4% identity Open · Scan
M07658_2.00 NN 70-40% CisBP CCGCCGCAGCCGCCG 51.2% identity Open · Scan
M07578_2.00 NN 70-40% CisBP CAACTCTCC 51.0% identity Open · Scan
M07717_2.00 NN 70-40% CisBP GGCTCCGCCCCC 51.0% identity Open · Scan
M07691_2.00 NN 70-40% CisBP CCTGCAGCCACCTTGGCCTTG 50.7% identity Open · Scan
MA1600.1 NN 70-40% JASPAR ATACAGTCCACCCCTTTA 50.7% identity Open · Scan
M00945_2.00 NN 70-40% CisBP CACCGCAC 50.5% identity Open · Scan
M07729_2.00 NN 70-40% CisBP CCAGACTGCCTGCCAAAACCCCCT 50.5% identity Open · Scan
MA0095.1 NN 70-40% JASPAR GCCATC 50.5% identity Open · Scan
M07562_2.00 NN 70-40% CisBP GAAAAAAAC 50.2% identity Open · Scan
ModCRE5
MotifPredictionSourceDNA bindingSupportLogoActions
TFS_tr_B4DX96_B4DX96_HUMAN:248:442_5wjq_D_1 ModCRE Homology model GCGACTTCGCTGAGTCTGGGCCCCCCT Region 248-442 · 1 3D model Open · Scan
TFS_tr_B4DX96_B4DX96_HUMAN:249:444_5v3j_E_1 ModCRE Homology model GAAAAGTCCAGTGAGGGGGGGCC Region 249-444 · 1 3D model Open · Scan
TFS_tr_B4DX96_B4DX96_HUMAN:249:444_5v3m_C_1 ModCRE Homology model GGGCGCTTCTGCGCATCGGGGCCC Region 249-444 · 1 3D model Open · Scan
TFS_tr_B4DX96_B4DX96_HUMAN:289:441_2i13_A_1 ModCRE Homology model ATTCGCTTAAAGGTACTTAGT Region 289-441 · 1 3D model Open · Scan
TFS_tr_B4DX96_B4DX96_HUMAN:332:442_5ei9_E_1 ModCRE Homology model GGGGGGGGGCCCACCCC Region 332-442 · 1 3D model Open · Scan

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 448 aa
248-444

Region 248-444 5 PWM

Residues
197 aa
Domains
PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF13465 · Zinc-finger double domain PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type
3D models
6 active PDBs · 6 summary rows
Templates
1LLM, 2I13, 5EI9, 5V3J, 5V3M, 5WJQ
Sources
Predicted = Low
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
6 active PDB models 6 summary rows
Region 248-4446 models · 6 summary rows
Actions
Predicted = Low DIMER_tr_B4DX96_B4DX96_HUMAN:361:412_1llm_D_1 1llm 361-412 View model · PDB
Predicted = Low TFS_tr_B4DX96_B4DX96_HUMAN:248:442_5wjq_D_1 5wjq 248-442 View model · PDB
Predicted = Low TFS_tr_B4DX96_B4DX96_HUMAN:249:444_5v3j_E_1 5v3j 249-444 View model · PDB
Predicted = Low TFS_tr_B4DX96_B4DX96_HUMAN:249:444_5v3m_C_1 5v3m 249-444 View model · PDB
Predicted = Low TFS_tr_B4DX96_B4DX96_HUMAN:289:441_2i13_A_1 2i13 289-441 View model · PDB
Predicted = Low TFS_tr_B4DX96_B4DX96_HUMAN:332:442_5ei9_E_1 5ei9 332-442 View model · PDB

Model-summary evidence imported for this region.

RankTemplateDomainN-tailsC-tailsChainsIdentity / similarityCoverageModel file
4 2i13 247:444 289 441 P:A · DNA:C,D 57.8% / 68.8% 99 View · PDB TFS_tr_B4DX96_B4DX96_HUMAN:289:441_2i13_A_1
5 5ei9 247:444 332 442 P:E · DNA:A,B 57.7% / 68.5% 100 View · PDB TFS_tr_B4DX96_B4DX96_HUMAN:332:442_5ei9_E_1
1 5wjq 247:444 248 442 P:D · DNA:A,B 49.5% / 69.4% 69 View · PDB TFS_tr_B4DX96_B4DX96_HUMAN:248:442_5wjq_D_1
2 5v3m 247:444 249 444 P:C · DNA:A,B 49.2% / 68.5% 70 View · PDB TFS_tr_B4DX96_B4DX96_HUMAN:249:444_5v3m_C_1
3 5v3j 247:444 249 444 P:E · DNA:A,B 49.2% / 68.5% 70 View · PDB TFS_tr_B4DX96_B4DX96_HUMAN:249:444_5v3j_E_1
1 1llm 247:444 361,361 412,412 P:C,D · DNA:A,B 44.2% / 61.5% 59,61 View · PDB DIMER_tr_B4DX96_B4DX96_HUMAN:361:412_1llm_D_1

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
42-83PF02023SCAN domainNo overlap with loaded model regions
252-274PF00096Zinc finger, C2H2 typeoverlaps 248-444
280-302PF00096Zinc finger, C2H2 typeoverlaps 248-444
311-329PF00096Zinc finger, C2H2 typeoverlaps 248-444
350-374PF13465Zinc-finger double domainoverlaps 248-444
391-413PF00096Zinc finger, C2H2 typeoverlaps 248-444
421-441PF00096Zinc finger, C2H2 typeoverlaps 248-444