ModCRE DB

Transcription factor

B4DXS5

cDNA FLJ57802, highly similar to Zinc finger protein 225

Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 670 aa

55 Generated PWM 1 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)1
MotifPredictionSourceDNA bindingSupportLogoActions
M08399_2.00 NN 70+% CisBP TACTCTGGGGCCACATGACTC 74.5% identity Open · Scan
Nearest Neighbor (70% - 40%)54
MotifPredictionSourceDNA bindingSupportLogoActions
M07679_2.00 NN 70-40% CisBP TGCGATCTC 64.1% identity Open · Scan
M00960_2.00 NN 70-40% CisBP TGCATCCC 61.4% identity Open · Scan
M00953_2.00 NN 70-40% CisBP ATCTATAT 61.1% identity Open · Scan
M00958_2.00 NN 70-40% CisBP CGGCATCCC 60.2% identity Open · Scan
M00944_2.00 NN 70-40% CisBP TCGCTATAA 60.0% identity Open · Scan
M00952_2.00 NN 70-40% CisBP GGATGCTC 60.0% identity Open · Scan
M00943_2.00 NN 70-40% CisBP CCCGCTGC 58.8% identity Open · Scan
M00955_2.00 NN 70-40% CisBP ACGTCCTCT 58.8% identity Open · Scan
M00959_2.00 NN 70-40% CisBP GCCCTCCC 58.8% identity Open · Scan
M02924_2.00 NN 70-40% CisBP AGTGTTAACAGAACACCT 58.8% identity Open · Scan
M07654_2.00 NN 70-40% CisBP TGCCCCCTGGTGGC 58.4% identity Open · Scan
MA1124.1 NN 70-40% JASPAR CATTCATTCATTC 57.7% identity Open · Scan
M00948_2.00 NN 70-40% CisBP GCAGCACC 57.6% identity Open · Scan
M00950_2.00 NN 70-40% CisBP GCAGCCCA 57.6% identity Open · Scan
M04610_2.00 NN 70-40% CisBP CGGCGACGCGAACAC 55.0% identity Open · Scan
M04650_2.00 NN 70-40% CisBP GCATAACTGCCCCGCTGCC 54.8% identity Open · Scan
M04653_2.00 NN 70-40% CisBP GGTACGGTTGTCCATGTTGCAA 54.8% identity Open · Scan
M08985_2.00 NN 70-40% CisBP TGAGGACCTACTGTGTGCC 53.9% identity Open · Scan
M08375_2.00 NN 70-40% CisBP TTCCCCATTGGCTACTGCACCGGTCCT 53.8% identity Open · Scan
M08901_2.00 NN 70-40% CisBP CCAGTTCACACC 53.5% identity Open · Scan
M04611_2.00 NN 70-40% CisBP CTTTCGGACAC 53.4% identity Open · Scan
M08325_2.00 NN 70-40% CisBP TTTTTTTTT 53.1% identity Open · Scan
M00939_2.00 NN 70-40% CisBP CCACCTCA 52.9% identity Open · Scan
M04387_2.00 NN 70-40% CisBP CGTGCTCCCC 52.7% identity Open · Scan
M04613_2.00 NN 70-40% CisBP CTCATGTGCTAATTACAAA 52.4% identity Open · Scan
M08887_2.00 NN 70-40% CisBP CCTCCTCCAGGAAGCCTTCCCTGA 52.3% identity Open · Scan
M08934_2.00 NN 70-40% CisBP GCTGTACCTGCTTATTAGGC 52.3% identity Open · Scan
M08944_2.00 NN 70-40% CisBP TACCATGCTGTTTTGATTAC 52.2% identity Open · Scan
M01456_2.00 NN 70-40% CisBP GTGATCGGCG 52.1% identity Open · Scan
M07683_2.00 NN 70-40% CisBP GTGGGAAAGCCT 52.0% identity Open · Scan
MA1601.1 NN 70-40% JASPAR ATGTGGGAAA 52.0% identity Open · Scan
MA1602.1 NN 70-40% JASPAR CGTCTACACGGG 51.9% identity Open · Scan
M08267_2.00 NN 70-40% CisBP CAGTTTCATTTTCC 51.7% identity Open · Scan
MA1656.1 NN 70-40% JASPAR CCAAGCCCAACCAG 51.7% identity Open · Scan
M00645_2.00 NN 70-40% CisBP CGCCCACGCA 51.6% identity Open · Scan
M08309_2.00 NN 70-40% CisBP AAAAACCCCCCTGCAGAGCCCAGCCCT 51.6% identity Open · Scan
M04505_2.00 NN 70-40% CisBP AGCTTTTCCCACAC 51.3% identity Open · Scan
M07658_2.00 NN 70-40% CisBP CCGCCGCAGCCGCCG 51.2% identity Open · Scan
M08329_2.00 NN 70-40% CisBP GCTGCATAGTATTCC 51.2% identity Open · Scan
M07689_2.00 NN 70-40% CisBP ACCCAGGCTCCTTCCATCTTGTGGCTC 51.1% identity Open · Scan
M07699_2.00 NN 70-40% CisBP GGTTTAT 51.1% identity Open · Scan
MA1154.1 NN 70-40% JASPAR CTTTCCCACAACACGAC 51.0% identity Open · Scan
M01474_2.00 NN 70-40% CisBP CGCCGATCAC 50.9% identity Open · Scan
M07579_2.00 NN 70-40% CisBP CATCTCCAGGA 50.9% identity Open · Scan
M07590_2.00 NN 70-40% CisBP TTTTTTTCTTTTATTTTTTTTTTTTTTTTTTTT 50.7% identity Open · Scan
M08373_2.00 NN 70-40% CisBP CCCCCTGGCTCTTCCTCT 50.7% identity Open · Scan
M07578_2.00 NN 70-40% CisBP CAACTCTCC 50.5% identity Open · Scan
M07712_2.00 NN 70-40% CisBP ACATTTTTTTAATCTAAAAAAACATTTACA 50.5% identity Open · Scan
M04598_2.00 NN 70-40% CisBP CGCTAACTCTCCACA 50.4% identity Open · Scan
M07635_2.00 NN 70-40% CisBP AAGTTTTCTTGTATTATATCT 50.4% identity Open · Scan
M07610_2.00 NN 70-40% CisBP CCTTCTTCCTCCCCCCTGCCCACC 50.3% identity Open · Scan
M07761_2.00 NN 70-40% CisBP CTGATTATTCACCCA 50.3% identity Open · Scan
M05859_2.00 NN 70-40% CisBP GGCCACGCCCACT 50.0% identity Open · Scan
MA0685.1 NN 70-40% JASPAR TAAGCCACGCCCCCTTT 50.0% identity Open · Scan
ModCRE0

No generated PWM in this category.

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 670 aa
223-499

Region 223-499 0 PWM

Residues
277 aa
Domains
PF00096 · Zinc finger, C2H2 type PF13912 · C2H2-type zinc finger PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type
3D models
1 active PDB
Templates
5V3J
Sources
Structure model
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
1 active PDB model
Region 223-4991 model
Actions
Predicted = Low TFS_B4DXS5:223:499_5v3j_E_1 5v3j 223-499 View model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
140-162PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
168-190PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
196-218PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
224-246PF00096Zinc finger, C2H2 typeoverlaps 223-499
252-276PF13912C2H2-type zinc fingeroverlaps 223-499
280-302PF00096Zinc finger, C2H2 typeoverlaps 223-499
308-330PF00096Zinc finger, C2H2 typeoverlaps 223-499
336-358PF00096Zinc finger, C2H2 typeoverlaps 223-499
364-386PF00096Zinc finger, C2H2 typeoverlaps 223-499
420-442PF00096Zinc finger, C2H2 typeoverlaps 223-499
448-470PF00096Zinc finger, C2H2 typeoverlaps 223-499
476-498PF00096Zinc finger, C2H2 typeoverlaps 223-499
504-526PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
532-554PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
560-582PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions