ModCRE DB

Transcription factor

B4DXW7

Transcription factor SOX-30

Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 448 aa

11 Generated PWM 1 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)2
MotifPredictionSourceDNA bindingSupportLogoActions
M05754_2.00 NN 70+% CisBP CATTGTTC 95.9% identity Open · Scan
M00201_2.00 NN 70+% CisBP ATTGTTCTGC 83.3% identity Open · Scan
Nearest Neighbor (70% - 40%)9
MotifPredictionSourceDNA bindingSupportLogoActions
M09408_2.00 NN 70-40% CisBP TTTTGTTTT 56.7% identity Open · Scan
MA1562.1 NN 70-40% JASPAR CCGAACAATG 52.7% identity Open · Scan
MA0084.1 NN 70-40% JASPAR GTAAACAAT 52.0% identity Open · Scan
M03979_2.00 NN 70-40% CisBP AAACAATAACATTGTTT 51.3% identity Open · Scan
M03983_2.00 NN 70-40% CisBP AAACAATTTCAGTGTTT 51.3% identity Open · Scan
MA0866.1 NN 70-40% JASPAR AACAATGGTAGTGTT 51.3% identity Open · Scan
MA0142.1 NN 70-40% JASPAR CTTTGTTATGCAAAT 51.2% identity Open · Scan
MA0143.4 NN 70-40% JASPAR AAACAATGGAA 51.2% identity Open · Scan
MA0868.1 NN 70-40% JASPAR AACAATGTGCAGTGTT 50.0% identity Open · Scan
ModCRE0

No generated PWM in this category.

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 448 aa
30-104

Region 30-104 0 PWM

Residues
75 aa
Domains
PF00505 · HMG (high mobility group) box
3D models
1 active PDB
Templates
3U2B
Sources
Structure model
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
1 active PDB model
Region 30-1041 model
Actions
Predicted = Low TFS_B4DXW7:30:104_3u2b_C_1 3u2b 30-104 View model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
32-99PF00505HMG (high mobility group) boxoverlaps 30-104