ModCRE DB

Transcription factor

B4DXX0

cDNA FLJ55452

Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 523 aa

34 Generated PWM 6 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)28
MotifPredictionSourceDNA bindingSupportLogoActions
M00939_2.00 NN 70-40% CisBP CCACCTCA 63.5% identity Open · Scan
M00958_2.00 NN 70-40% CisBP CGGCATCCC 58.8% identity Open · Scan
M00943_2.00 NN 70-40% CisBP CCCGCTGC 58.3% identity Open · Scan
M00944_2.00 NN 70-40% CisBP TCGCTATAA 57.6% identity Open · Scan
M00948_2.00 NN 70-40% CisBP GCAGCACC 57.6% identity Open · Scan
M00960_2.00 NN 70-40% CisBP TGCATCCC 57.6% identity Open · Scan
M00952_2.00 NN 70-40% CisBP GGATGCTC 57.1% identity Open · Scan
M07733_2.00 NN 70-40% CisBP TCTTTCTCTCTCTCC 56.5% identity Open · Scan
M00959_2.00 NN 70-40% CisBP GCCCTCCC 56.4% identity Open · Scan
M00950_2.00 NN 70-40% CisBP GCAGCCCA 55.9% identity Open · Scan
M00953_2.00 NN 70-40% CisBP ATCTATAT 55.2% identity Open · Scan
M04653_2.00 NN 70-40% CisBP GGTACGGTTGTCCATGTTGCAA 54.8% identity Open · Scan
M08254_2.00 NN 70-40% CisBP CTGCCCTGGGACTTT 53.8% identity Open · Scan
M00955_2.00 NN 70-40% CisBP ACGTCCTCT 53.5% identity Open · Scan
M04650_2.00 NN 70-40% CisBP GCATAACTGCCCCGCTGCC 53.1% identity Open · Scan
M08985_2.00 NN 70-40% CisBP TGAGGACCTACTGTGTGCC 52.9% identity Open · Scan
M07648_2.00 NN 70-40% CisBP GCTTGCAAAAAAAATTTAACTCCCAGCTC 51.7% identity Open · Scan
M00945_2.00 NN 70-40% CisBP CACCGCAC 51.1% identity Open · Scan
M02924_2.00 NN 70-40% CisBP AGTGTTAACAGAACACCT 50.8% identity Open · Scan
M07689_2.00 NN 70-40% CisBP ACCCAGGCTCCTTCCATCTTGTGGCTC 50.6% identity Open · Scan
M07753_2.00 NN 70-40% CisBP TGCATTCCTTGGCTTGTG 50.4% identity Open · Scan
M08325_2.00 NN 70-40% CisBP TTTTTTTTT 50.3% identity Open · Scan
MA1602.1 NN 70-40% JASPAR CGTCTACACGGG 50.2% identity Open · Scan
M01474_2.00 NN 70-40% CisBP CGCCGATCAC 50.0% identity Open · Scan
M01540_2.00 NN 70-40% CisBP CTCCCCC 50.0% identity Open · Scan
M07562_2.00 NN 70-40% CisBP GAAAAAAAC 50.0% identity Open · Scan
M08908_2.00 NN 70-40% CisBP GCTGCTGCTTCTGCTG 50.0% identity Open · Scan
MA1124.1 NN 70-40% JASPAR CATTCATTCATTC 50.0% identity Open · Scan
ModCRE6
MotifPredictionSourceDNA bindingSupportLogoActions
DIMER_tr_B4DXX0_B4DXX0_HUMAN:274:322_1llm_D_1 ModCRE Homology model TCACGGCCGCGA Region 274-322 · 1 3D model Open · Scan
TFS_tr_B4DXX0_B4DXX0_HUMAN:139:434_7w1m_H_1 ModCRE Homology model TAACAGCGCCCGAGGGACTTACGTAACATGAATACGCCCGAAT Region 139-434 · 1 3D model Open · Scan
TFS_tr_B4DXX0_B4DXX0_HUMAN:192:467_5v3j_E_1 ModCRE Homology model ATCCGGGGCCAGGTGGGAACCGGGCA Region 192-467 · 1 3D model Open · Scan
TFS_tr_B4DXX0_B4DXX0_HUMAN:192:467_5v3m_C_1 ModCRE Homology model GGGGGGAGGGCGGAAGGAGGTTCCCG Region 192-467 · 1 3D model Open · Scan
TFS_tr_B4DXX0_B4DXX0_HUMAN:210:354_2i13_A_1 ModCRE Homology model ATTCTTCTAGATATTAGGACC Region 210-354 · 1 3D model Open · Scan
TFS_tr_B4DXX0_B4DXX0_HUMAN:217:495_5wjq_D_1 ModCRE Homology model GTGAGATGGGGGCGGGGGGGGTTGCGGT Region 217-495 · 1 3D model Open · Scan

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 523 aa
139-495

Region 139-495 6 PWM

Residues
357 aa
Domains
PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type
3D models
6 active PDBs · 6 summary rows
Templates
1LLM, 2I13, 5V3J, 5V3M, 5WJQ, 7W1M
Sources
Predicted = Low
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
6 active PDB models 6 summary rows
Region 139-4956 models · 6 summary rows
Actions
Predicted = Low DIMER_tr_B4DXX0_B4DXX0_HUMAN:274:322_1llm_D_1 1llm 274-322 View model · PDB
Predicted = Low TFS_tr_B4DXX0_B4DXX0_HUMAN:139:434_7w1m_H_1 7w1m 139-434 View model · PDB
Predicted = Low TFS_tr_B4DXX0_B4DXX0_HUMAN:192:467_5v3j_E_1 5v3j 192-467 View model · PDB
Predicted = Low TFS_tr_B4DXX0_B4DXX0_HUMAN:192:467_5v3m_C_1 5v3m 192-467 View model · PDB
Predicted = Low TFS_tr_B4DXX0_B4DXX0_HUMAN:210:354_2i13_A_1 2i13 210-354 View model · PDB
Predicted = Low TFS_tr_B4DXX0_B4DXX0_HUMAN:217:495_5wjq_D_1 5wjq 217-495 View model · PDB

Model-summary evidence imported for this region.

RankTemplateDomainN-tailsC-tailsChainsIdentity / similarityCoverageModel file
5 2i13 139:495 210 354 P:A · DNA:C,D 52.4% / 64.8% 94 View · PDB TFS_tr_B4DXX0_B4DXX0_HUMAN:210:354_2i13_A_1
1 5wjq 139:495 217 495 P:D · DNA:A,B 45.9% / 63.4% 99 View · PDB TFS_tr_B4DXX0_B4DXX0_HUMAN:217:495_5wjq_D_1
2 5v3m 139:495 192 467 P:C · DNA:A,B 43.8% / 62.7% 99 View · PDB TFS_tr_B4DXX0_B4DXX0_HUMAN:192:467_5v3m_C_1
3 5v3j 139:495 192 467 P:E · DNA:A,B 43.8% / 62.7% 99 View · PDB TFS_tr_B4DXX0_B4DXX0_HUMAN:192:467_5v3j_E_1
1 1llm 139:495 274,274 322,322 P:C,D · DNA:A,B 40.8% / 63.3% 56,57 View · PDB DIMER_tr_B4DXX0_B4DXX0_HUMAN:274:322_1llm_D_1
4 7w1m 139:495 139 434 P:H · DNA:F,G 34.8% / 48.9% 91 View · PDB TFS_tr_B4DXX0_B4DXX0_HUMAN:139:434_7w1m_H_1

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
108-130PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
220-242PF00096Zinc finger, C2H2 typeoverlaps 139-495
248-270PF00096Zinc finger, C2H2 typeoverlaps 139-495
276-298PF00096Zinc finger, C2H2 typeoverlaps 139-495
304-326PF00096Zinc finger, C2H2 typeoverlaps 139-495
332-354PF00096Zinc finger, C2H2 typeoverlaps 139-495
360-382PF00096Zinc finger, C2H2 typeoverlaps 139-495
388-410PF00096Zinc finger, C2H2 typeoverlaps 139-495
416-438PF00096Zinc finger, C2H2 typeoverlaps 139-495
444-466PF00096Zinc finger, C2H2 typeoverlaps 139-495