ModCRE DB

Transcription factor

B4DXY2

Transcription initiation factor IIF subunit alpha

Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 432 aa

2 Generated PWM 5 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)0

No generated PWM in this category.

ModCRE2
MotifPredictionSourceDNA bindingSupportLogoActions
TFS_tr_B4DXY2_B4DXY2_HUMAN:1:81_6o9l_S_1 ModCRE Homology model ACGCGCGTCGCGTA Region 1-81 · 1 3D model Open · Scan
TFS_tr_B4DXY2_B4DXY2_HUMAN:83:95_6o9l_S_1 ModCRE Homology model GCCCCA Region 83-95 · 1 3D model Open · Scan

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 432 aa
1-81
83-95

Region 1-81 1 PWM

Residues
81 aa
Domains
PF05793 · Transcription initiation factor IIF, alpha subunit (TFIIF-alpha)
3D models
1 active PDB · 1 summary row
Templates
6O9L
Sources
Predicted = Low
Scan this region Show models

Region 83-95 1 PWM

Residues
13 aa
Domains
PF05793 · Transcription initiation factor IIF, alpha subunit (TFIIF-alpha)
3D models
4 active PDBs
Templates
5IY6, 5IYA, 5IYB, 6O9L
Sources
Predicted = Low
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
5 active PDB models 1 summary row
Region 1-811 model · 1 summary row
Actions
Predicted = Low TFS_tr_B4DXY2_B4DXY2_HUMAN:1:81_6o9l_S_1 6o9l 1-81 View model · PDB

Model-summary evidence imported for this region.

RankTemplateDomainN-tailsC-tailsChainsIdentity / similarityCoverageModel file
1 6o9l 1:81 1 81 P:S · DNA:X,Y 100.0% / 100.0% 46 View · PDB TFS_tr_B4DXY2_B4DXY2_HUMAN:1:81_6o9l_S_1
Region 83-954 models
Actions
Predicted = Low TFS_tr_B4DXY2_B4DXY2_HUMAN:83:95_5iy6_S_1 5iy6 83-95 View model · PDB
Predicted = Low TFS_tr_B4DXY2_B4DXY2_HUMAN:83:95_5iya_S_1 5iya 83-95 View model · PDB
Predicted = Low TFS_tr_B4DXY2_B4DXY2_HUMAN:83:95_5iyb_S_1 5iyb 83-95 View model · PDB
Predicted = Low TFS_tr_B4DXY2_B4DXY2_HUMAN:83:95_6o9l_S_1 6o9l 83-95 View model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
81-432PF05793Transcription initiation factor IIF, alpha subunit (TFIIF-alpha)overlaps 1-81overlaps 83-95