ModCRE DB

Transcription factor

B4DY71

cDNA FLJ57665, highly similar to Zinc finger protein 473

Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 859 aa

55 Generated PWM 6 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)49
MotifPredictionSourceDNA bindingSupportLogoActions
M00953_2.00 NN 70-40% CisBP ATCTATAT 67.0% identity Open · Scan
M00950_2.00 NN 70-40% CisBP GCAGCCCA 65.8% identity Open · Scan
M00939_2.00 NN 70-40% CisBP CCACCTCA 64.7% identity Open · Scan
M00955_2.00 NN 70-40% CisBP ACGTCCTCT 64.2% identity Open · Scan
M00943_2.00 NN 70-40% CisBP CCCGCTGC 63.5% identity Open · Scan
M00944_2.00 NN 70-40% CisBP TCGCTATAA 63.5% identity Open · Scan
M00959_2.00 NN 70-40% CisBP GCCCTCCC 63.5% identity Open · Scan
M00960_2.00 NN 70-40% CisBP TGCATCCC 63.5% identity Open · Scan
M00958_2.00 NN 70-40% CisBP CGGCATCCC 62.3% identity Open · Scan
MA1124.1 NN 70-40% JASPAR CATTCATTCATTC 61.4% identity Open · Scan
M00948_2.00 NN 70-40% CisBP GCAGCACC 61.1% identity Open · Scan
M00952_2.00 NN 70-40% CisBP GGATGCTC 61.1% identity Open · Scan
M02924_2.00 NN 70-40% CisBP AGTGTTAACAGAACACCT 60.1% identity Open · Scan
M08325_2.00 NN 70-40% CisBP TTTTTTTTT 59.2% identity Open · Scan
M00945_2.00 NN 70-40% CisBP CACCGCAC 57.4% identity Open · Scan
M08985_2.00 NN 70-40% CisBP TGAGGACCTACTGTGTGCC 57.2% identity Open · Scan
M04387_2.00 NN 70-40% CisBP CGTGCTCCCC 55.7% identity Open · Scan
M04613_2.00 NN 70-40% CisBP CTCATGTGCTAATTACAAA 55.7% identity Open · Scan
M04650_2.00 NN 70-40% CisBP GCATAACTGCCCCGCTGCC 55.3% identity Open · Scan
M04598_2.00 NN 70-40% CisBP CGCTAACTCTCCACA 54.8% identity Open · Scan
M04475_2.00 NN 70-40% CisBP GATGCACGTACCGTGCCTCA 53.6% identity Open · Scan
M07623_2.00 NN 70-40% CisBP GTCTAATAGAGCTGGGCTGCA 52.6% identity Open · Scan
M08254_2.00 NN 70-40% CisBP CTGCCCTGGGACTTT 52.5% identity Open · Scan
M08283_2.00 NN 70-40% CisBP GACTTTTATTTT 52.3% identity Open · Scan
M04465_2.00 NN 70-40% CisBP GTGATTCTTATCTTATCCTT 52.2% identity Open · Scan
M01044_2.00 NN 70-40% CisBP TCTCTCTTTC 52.0% identity Open · Scan
M00609_2.00 NN 70-40% CisBP GGAAGCCCTA 51.7% identity Open · Scan
M08901_2.00 NN 70-40% CisBP CCAGTTCACACC 51.7% identity Open · Scan
M00779_2.00 NN 70-40% CisBP GCCACGCCCA 51.3% identity Open · Scan
M04463_2.00 NN 70-40% CisBP CACCACGCCCA 51.3% identity Open · Scan
M08867_2.00 NN 70-40% CisBP CACCCCCTG 51.3% identity Open · Scan
MA0039.1 NN 70-40% JASPAR TAAAGGAAGG 51.3% identity Open · Scan
MA0039.3 NN 70-40% JASPAR CCACACCCTGC 51.3% identity Open · Scan
M07635_2.00 NN 70-40% CisBP AAGTTTTCTTGTATTATATCT 51.0% identity Open · Scan
M08334_2.00 NN 70-40% CisBP TTTGTTTTTTTCTGATTGCTTTTTACTTAT 51.0% identity Open · Scan
M01474_2.00 NN 70-40% CisBP CGCCGATCAC 50.9% identity Open · Scan
M07686_2.00 NN 70-40% CisBP TAGCTTGTTTCCAGCCAC 50.9% identity Open · Scan
M08375_2.00 NN 70-40% CisBP TTCCCCATTGGCTACTGCACCGGTCCT 50.9% identity Open · Scan
M03671_2.00 NN 70-40% CisBP ATTACCATACAAGTGCAC 50.8% identity Open · Scan
M04505_2.00 NN 70-40% CisBP AGCTTTTCCCACAC 50.6% identity Open · Scan
M08256_2.00 NN 70-40% CisBP GTGCCTT 50.4% identity Open · Scan
MA0750.1 NN 70-40% JASPAR GGCGACCACCGA 50.4% identity Open · Scan
MA1154.1 NN 70-40% JASPAR CTTTCCCACAACACGAC 50.3% identity Open · Scan
M00786_2.00 NN 70-40% CisBP TATATATAT 50.2% identity Open · Scan
M07562_2.00 NN 70-40% CisBP GAAAAAAAC 50.2% identity Open · Scan
MA1602.1 NN 70-40% JASPAR CGTCTACACGGG 50.2% identity Open · Scan
M01181_2.00 NN 70-40% CisBP GCGCATCCCC 50.0% identity Open · Scan
M06169_2.00 NN 70-40% CisBP GCCACGCCCAAC 50.0% identity Open · Scan
MA1515.1 NN 70-40% JASPAR CACCACGCCCA 50.0% identity Open · Scan
ModCRE6
MotifPredictionSourceDNA bindingSupportLogoActions
DIMER_tr_B4DY71_B4DY71_HUMAN:688:739_1llm_D_1 ModCRE Homology model TCCCGCGACCTT Region 688-739 · 1 3D model Open · Scan
TFS_tr_B4DY71_B4DY71_HUMAN:551:825_5v3j_E_1 ModCRE Homology model GCACACGTGTCACCGGGCTCCGCCTA Region 551-825 · 1 3D model Open · Scan
TFS_tr_B4DY71_B4DY71_HUMAN:551:825_5v3m_C_1 ModCRE Homology model GGGCCCCCCCGCACACCCCCCTCCCC Region 551-825 · 1 3D model Open · Scan
TFS_tr_B4DY71_B4DY71_HUMAN:577:852_5wjq_D_1 ModCRE Homology model ACCCCCCCCCCTCCCCGCACCACACCGG Region 577-852 · 1 3D model Open · Scan
TFS_tr_B4DY71_B4DY71_HUMAN:671:824_2i13_A_1 ModCRE Homology model ATTCGACTACTAGTAGCGGAA Region 671-824 · 1 3D model Open · Scan
TFS_tr_B4DY71_B4DY71_HUMAN:715:825_5ei9_E_1 ModCRE Homology model GGGGCCCCCCCCTTCGA Region 715-825 · 1 3D model Open · Scan

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 859 aa
551-852

Region 551-852 6 PWM

Residues
302 aa
Domains
PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type
3D models
6 active PDBs · 6 summary rows
Templates
1LLM, 2I13, 5EI9, 5V3J, 5V3M, 5WJQ
Sources
Predicted = Low
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
6 active PDB models 6 summary rows
Region 551-8526 models · 6 summary rows
Actions
Predicted = Low DIMER_tr_B4DY71_B4DY71_HUMAN:688:739_1llm_D_1 1llm 688-739 View model · PDB
Predicted = Low TFS_tr_B4DY71_B4DY71_HUMAN:551:825_5v3j_E_1 5v3j 551-825 View model · PDB
Predicted = Low TFS_tr_B4DY71_B4DY71_HUMAN:551:825_5v3m_C_1 5v3m 551-825 View model · PDB
Predicted = Low TFS_tr_B4DY71_B4DY71_HUMAN:577:852_5wjq_D_1 5wjq 577-852 View model · PDB
Predicted = Low TFS_tr_B4DY71_B4DY71_HUMAN:671:824_2i13_A_1 2i13 671-824 View model · PDB
Predicted = Low TFS_tr_B4DY71_B4DY71_HUMAN:715:825_5ei9_E_1 5ei9 715-825 View model · PDB

Model-summary evidence imported for this region.

RankTemplateDomainN-tailsC-tailsChainsIdentity / similarityCoverageModel file
5 5ei9 550:853 715 825 P:E · DNA:A,B 59.5% / 69.4% 100 View · PDB TFS_tr_B4DY71_B4DY71_HUMAN:715:825_5ei9_E_1
4 2i13 550:853 671 824 P:A · DNA:C,D 55.8% / 69.5% 100 View · PDB TFS_tr_B4DY71_B4DY71_HUMAN:671:824_2i13_A_1
1 5wjq 550:853 577 852 P:D · DNA:A,B 47.3% / 66.1% 98 View · PDB TFS_tr_B4DY71_B4DY71_HUMAN:577:852_5wjq_D_1
1 1llm 550:853 688,688 739,739 P:C,D · DNA:A,B 46.2% / 59.6% 59,61 View · PDB DIMER_tr_B4DY71_B4DY71_HUMAN:688:739_1llm_D_1
2 5v3m 550:853 551 825 P:C · DNA:A,B 46.0% / 64.9% 98 View · PDB TFS_tr_B4DY71_B4DY71_HUMAN:551:825_5v3m_C_1
3 5v3j 550:853 551 825 P:E · DNA:A,B 46.0% / 64.9% 98 View · PDB TFS_tr_B4DY71_B4DY71_HUMAN:551:825_5v3j_E_1

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
197-219PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
308-330PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
335-357PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
364-385PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
419-441PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
447-469PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
475-497PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
579-601PF00096Zinc finger, C2H2 typeoverlaps 551-852
634-656PF00096Zinc finger, C2H2 typeoverlaps 551-852
662-684PF00096Zinc finger, C2H2 typeoverlaps 551-852
691-712PF00096Zinc finger, C2H2 typeoverlaps 551-852
718-740PF00096Zinc finger, C2H2 typeoverlaps 551-852
746-768PF00096Zinc finger, C2H2 typeoverlaps 551-852
774-796PF00096Zinc finger, C2H2 typeoverlaps 551-852
802-824PF00096Zinc finger, C2H2 typeoverlaps 551-852