ModCRE DB

Transcription factor

B4DYR8

Zinc finger and BTB domain-containing protein 38

Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 1196 aa

8 Generated PWM 6 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)3
MotifPredictionSourceDNA bindingSupportLogoActions
MA0591.1 NN 70-40% JASPAR AGGATGACTCAGCAC 56.8% identity Open · Scan
M01456_2.00 NN 70-40% CisBP GTGATCGGCG 52.1% identity Open · Scan
MA1633.1 NN 70-40% JASPAR GATGACTCAGCAA 50.8% identity Open · Scan
ModCRE5
MotifPredictionSourceDNA bindingSupportLogoActions
TFS_tr_B4DYR8_B4DYR8_HUMAN:1010:1120_6e94_A_1 ModCRE Homology model TTACGCTCGCCCCCGTGG Region 1010-1120 · 1 3D model Open · Scan
TFS_tr_B4DYR8_B4DYR8_HUMAN:1010:1121_6e93_A_1 ModCRE Homology model TCATGCCTCGCCCCCTGG Region 1010-1121 · 1 3D model Open · Scan
TFS_tr_B4DYR8_B4DYR8_HUMAN:449:543_2lt7_A_1 ModCRE Homology model GACTTCCCCGAAACCCG Region 449-543 · 1 3D model Open · Scan
TFS_tr_B4DYR8_B4DYR8_HUMAN:449:543_5vmv_A_1 ModCRE Homology model CCTATCCCGCGAACCC Region 449-543 · 1 3D model Open · Scan
TFS_tr_B4DYR8_B4DYR8_HUMAN:449:543_5vmx_A_1 ModCRE Homology model CGATCCCAGAAAAGG Region 449-543 · 1 3D model Open · Scan

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 1196 aa
449-543
1009-1121

Region 449-543 3 PWM

Residues
95 aa
Domains
PF00096 · Zinc finger, C2H2 type
3D models
3 active PDBs · 3 summary rows
Templates
2LT7, 5VMV, 5VMX
Sources
Predicted = Low
Scan this region Show models

Region 1009-1121 2 PWM

Residues
113 aa
Domains
PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type
3D models
3 active PDBs · 3 summary rows
Templates
1LLM, 6E93, 6E94
Sources
Predicted = Low
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
6 active PDB models 6 summary rows
Region 449-5433 models · 3 summary rows
Actions
Predicted = Low TFS_tr_B4DYR8_B4DYR8_HUMAN:449:543_2lt7_A_1 2lt7 449-543 View model · PDB
Predicted = Low TFS_tr_B4DYR8_B4DYR8_HUMAN:449:543_5vmv_A_1 5vmv 449-543 View model · PDB
Predicted = Low TFS_tr_B4DYR8_B4DYR8_HUMAN:449:543_5vmx_A_1 5vmx 449-543 View model · PDB

Model-summary evidence imported for this region.

RankTemplateDomainN-tailsC-tailsChainsIdentity / similarityCoverageModel file
3 5vmv 982:1173 449 543 P:A · DNA:D,E 60.0% / 75.8% 81 View · PDB TFS_tr_B4DYR8_B4DYR8_HUMAN:449:543_5vmv_A_1
4 2lt7 982:1173 449 543 P:A · DNA:D,E 60.0% / 75.8% 71 View · PDB TFS_tr_B4DYR8_B4DYR8_HUMAN:449:543_2lt7_A_1
5 5vmx 982:1173 449 543 P:A · DNA:D,E 60.0% / 75.8% 77 View · PDB TFS_tr_B4DYR8_B4DYR8_HUMAN:449:543_5vmx_A_1
Region 1009-11213 models · 3 summary rows
Actions
Predicted = Low DIMER_tr_B4DYR8_B4DYR8_HUMAN:1009:1060_1llm_C_1 1llm 1009-1060 View model · PDB
Predicted = Low TFS_tr_B4DYR8_B4DYR8_HUMAN:1010:1120_6e94_A_1 6e94 1010-1120 View model · PDB
Predicted = Low TFS_tr_B4DYR8_B4DYR8_HUMAN:1010:1121_6e93_A_1 6e93 1010-1121 View model · PDB

Model-summary evidence imported for this region.

RankTemplateDomainN-tailsC-tailsChainsIdentity / similarityCoverageModel file
1 6e93 982:1173 1010 1121 P:A · DNA:C,D 100.0% / 100.0% 100 View · PDB TFS_tr_B4DYR8_B4DYR8_HUMAN:1010:1121_6e93_A_1
2 6e94 982:1173 1010 1120 P:A · DNA:C,D 99.1% / 100.0% 100 View · PDB TFS_tr_B4DYR8_B4DYR8_HUMAN:1010:1120_6e94_A_1
1 1llm 982:1173 1009,1009 1060,1060 P:C,D · DNA:A,B 38.5% / 55.8% 59,61 View · PDB DIMER_tr_B4DYR8_B4DYR8_HUMAN:1009:1060_1llm_C_1

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
24-126PF00651BTB/POZ domainNo overlap with loaded model regions
461-483PF00096Zinc finger, C2H2 typeoverlaps 449-543
1039-1061PF00096Zinc finger, C2H2 typeoverlaps 1009-1121
1067-1089PF00096Zinc finger, C2H2 typeoverlaps 1009-1121