ModCRE DB

Transcription factor

B4DZP9

cDNA FLJ54726, highly similar to Zinc finger protein 562

Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 389 aa

49 Generated PWM 13 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)36
MotifPredictionSourceDNA bindingSupportLogoActions
M00950_2.00 NN 70-40% CisBP GCAGCCCA 60.0% identity Open · Scan
M00955_2.00 NN 70-40% CisBP ACGTCCTCT 60.0% identity Open · Scan
M00959_2.00 NN 70-40% CisBP GCCCTCCC 60.0% identity Open · Scan
M00944_2.00 NN 70-40% CisBP TCGCTATAA 58.8% identity Open · Scan
M00948_2.00 NN 70-40% CisBP GCAGCACC 58.8% identity Open · Scan
M00953_2.00 NN 70-40% CisBP ATCTATAT 58.8% identity Open · Scan
M00960_2.00 NN 70-40% CisBP TGCATCCC 58.8% identity Open · Scan
M00939_2.00 NN 70-40% CisBP CCACCTCA 57.6% identity Open · Scan
M00943_2.00 NN 70-40% CisBP CCCGCTGC 57.6% identity Open · Scan
M00952_2.00 NN 70-40% CisBP GGATGCTC 57.6% identity Open · Scan
M00958_2.00 NN 70-40% CisBP CGGCATCCC 57.6% identity Open · Scan
M02924_2.00 NN 70-40% CisBP AGTGTTAACAGAACACCT 57.5% identity Open · Scan
M08325_2.00 NN 70-40% CisBP TTTTTTTTT 56.3% identity Open · Scan
M01538_2.00 NN 70-40% CisBP GCCCCTGA 55.8% identity Open · Scan
M08985_2.00 NN 70-40% CisBP TGAGGACCTACTGTGTGCC 55.2% identity Open · Scan
M04650_2.00 NN 70-40% CisBP GCATAACTGCCCCGCTGCC 54.6% identity Open · Scan
M04611_2.00 NN 70-40% CisBP CTTTCGGACAC 54.3% identity Open · Scan
MA1124.1 NN 70-40% JASPAR CATTCATTCATTC 53.9% identity Open · Scan
M04613_2.00 NN 70-40% CisBP CTCATGTGCTAATTACAAA 53.6% identity Open · Scan
M01042_2.00 NN 70-40% CisBP TGGGACCTGA 53.3% identity Open · Scan
M07562_2.00 NN 70-40% CisBP GAAAAAAAC 52.5% identity Open · Scan
M08908_2.00 NN 70-40% CisBP GCTGCTGCTTCTGCTG 52.3% identity Open · Scan
MA1602.1 NN 70-40% JASPAR CGTCTACACGGG 51.8% identity Open · Scan
M01868_2.00 NN 70-40% CisBP TCTTGGCG 51.5% identity Open · Scan
M04505_2.00 NN 70-40% CisBP AGCTTTTCCCACAC 51.4% identity Open · Scan
M00609_2.00 NN 70-40% CisBP GGAAGCCCTA 51.3% identity Open · Scan
M04598_2.00 NN 70-40% CisBP CGCTAACTCTCCACA 51.3% identity Open · Scan
M04387_2.00 NN 70-40% CisBP CGTGCTCCCC 50.9% identity Open · Scan
M07678_2.00 NN 70-40% CisBP CCCGCCCCCTCCTCCCCCTTCCCACCC 50.8% identity Open · Scan
M01181_2.00 NN 70-40% CisBP GCGCATCCCC 50.6% identity Open · Scan
M04465_2.00 NN 70-40% CisBP GTGATTCTTATCTTATCCTT 50.3% identity Open · Scan
M07683_2.00 NN 70-40% CisBP GTGGGAAAGCCT 50.3% identity Open · Scan
MA1601.1 NN 70-40% JASPAR ATGTGGGAAA 50.3% identity Open · Scan
M00645_2.00 NN 70-40% CisBP CGCCCACGCA 50.0% identity Open · Scan
M08540_2.00 NN 70-40% CisBP CCCCT 50.0% identity Open · Scan
MA0750.1 NN 70-40% JASPAR GGCGACCACCGA 50.0% identity Open · Scan
ModCRE13
MotifPredictionSourceDNA bindingSupportLogoActions
DIMER_tr_B4DZP9_B4DZP9_HUMAN:333:381_1llm_D_1 ModCRE Homology model CCCGCGGCGGGG Region 333-381 · 1 3D model Open · Scan
DIMER_tr_B4DZP9_B4DZP9_HUMAN:48:69_1d66_B_1 ModCRE Homology model GTTTTTAAACCA Region 48-69 · 1 3D model Open · Scan
DIMER_tr_B4DZP9_B4DZP9_HUMAN:48:69_3coq_B_1 ModCRE Homology model AGTTTTTTAGGGGT Region 48-69 · 1 3D model Open · Scan
TFS_tr_B4DZP9_B4DZP9_HUMAN:126:386_5wjq_D_1 ModCRE Homology model GGGCCGGGGGGGGGAGGGGGGCCGCCGG Region 126-386 · 1 3D model Open · Scan
TFS_tr_B4DZP9_B4DZP9_HUMAN:140:389_5v3j_E_1 ModCRE Homology model GAGGAAGAGGGGGGGGGGGGAAC Region 140-389 · 1 3D model Open · Scan
TFS_tr_B4DZP9_B4DZP9_HUMAN:140:389_5v3m_C_1 ModCRE Homology model GCGGGCCGGGGGGTGCGGGGTCCG Region 140-389 · 1 3D model Open · Scan
TFS_tr_B4DZP9_B4DZP9_HUMAN:144:189_4is1_D_1 ModCRE Homology model TCTCACACCG Region 144-189 · 1 3D model Open · Scan
TFS_tr_B4DZP9_B4DZP9_HUMAN:144:189_5yj3_C_1 ModCRE Homology model CGAAA Region 144-189 · 1 3D model Open · Scan
TFS_tr_B4DZP9_B4DZP9_HUMAN:144:217_1a1g_A_1 ModCRE Homology model AGATGTGGCA Region 144-217 · 1 3D model Open · Scan
TFS_tr_B4DZP9_B4DZP9_HUMAN:165:218_1f2i_G_1 ModCRE Homology model GCACGTTGTTC Region 165-218 · 1 3D model Open · Scan
TFS_tr_B4DZP9_B4DZP9_HUMAN:165:218_1f2i_H_1 ModCRE Homology model AAAAACCGCGC Region 165-218 · 1 3D model Open · Scan
TFS_tr_B4DZP9_B4DZP9_HUMAN:232:385_2i13_A_1 ModCRE Homology model TTTTGAAAGAGCTAGGCTCTT Region 232-385 · 1 3D model Open · Scan
TFS_tr_B4DZP9_B4DZP9_HUMAN:277:386_5ei9_E_1 ModCRE Homology model AGGGGGGGTCAGGGGCC Region 277-386 · 1 3D model Open · Scan

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 389 aa
48-69
126-389

Region 48-69 2 PWM

Residues
22 aa
Domains
No overlapping PFAM annotation recorded
3D models
2 active PDBs
Templates
1D66, 3COQ
Sources
Predicted = Low
Scan this region Show models

Region 126-389 11 PWM

Residues
264 aa
Domains
PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type
3D models
11 active PDBs · 6 summary rows
Templates
1A1G, 1F2I, 1LLM, 2I13, 4IS1, 5EI9, 5V3J, 5V3M, ...
Sources
Predicted = Low
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
13 active PDB models 6 summary rows
Region 48-692 models
Actions
Predicted = Low DIMER_tr_B4DZP9_B4DZP9_HUMAN:48:69_1d66_B_1 1d66 48-69 View model · PDB
Predicted = Low DIMER_tr_B4DZP9_B4DZP9_HUMAN:48:69_3coq_B_1 3coq 48-69 View model · PDB
Region 126-38911 models · 6 summary rows
Actions
Predicted = Low DIMER_tr_B4DZP9_B4DZP9_HUMAN:333:381_1llm_D_1 1llm 333-381 View model · PDB
Predicted = Low TFS_tr_B4DZP9_B4DZP9_HUMAN:126:386_5wjq_D_1 5wjq 126-386 View model · PDB
Predicted = Low TFS_tr_B4DZP9_B4DZP9_HUMAN:140:389_5v3j_E_1 5v3j 140-389 View model · PDB
Predicted = Low TFS_tr_B4DZP9_B4DZP9_HUMAN:140:389_5v3m_C_1 5v3m 140-389 View model · PDB
Predicted = Low TFS_tr_B4DZP9_B4DZP9_HUMAN:144:189_4is1_D_1 4is1 144-189 View model · PDB
Predicted = Low TFS_tr_B4DZP9_B4DZP9_HUMAN:144:189_5yj3_C_1 5yj3 144-189 View model · PDB
Predicted = Low TFS_tr_B4DZP9_B4DZP9_HUMAN:144:217_1a1g_A_1 1a1g 144-217 View model · PDB
Predicted = Low TFS_tr_B4DZP9_B4DZP9_HUMAN:165:218_1f2i_G_1 1f2i 165-218 View model · PDB
Predicted = Low TFS_tr_B4DZP9_B4DZP9_HUMAN:165:218_1f2i_H_1 1f2i 165-218 View model · PDB
Predicted = Low TFS_tr_B4DZP9_B4DZP9_HUMAN:232:385_2i13_A_1 2i13 232-385 View model · PDB
Predicted = Low TFS_tr_B4DZP9_B4DZP9_HUMAN:277:386_5ei9_E_1 5ei9 277-386 View model · PDB

Model-summary evidence imported for this region.

RankTemplateDomainN-tailsC-tailsChainsIdentity / similarityCoverageModel file
5 5ei9 120:389 277 386 P:E · DNA:A,B 53.6% / 67.3% 99 View · PDB TFS_tr_B4DZP9_B4DZP9_HUMAN:277:386_5ei9_E_1
1 1llm 120:389 333,333 381,381 P:C,D · DNA:A,B 51.0% / 65.3% 56,57 View · PDB DIMER_tr_B4DZP9_B4DZP9_HUMAN:333:381_1llm_D_1
4 2i13 120:389 232 385 P:A · DNA:C,D 50.0% / 65.6% 100 View · PDB TFS_tr_B4DZP9_B4DZP9_HUMAN:232:385_2i13_A_1
2 5v3m 120:389 140 389 P:C · DNA:A,B 46.4% / 63.6% 90 View · PDB TFS_tr_B4DZP9_B4DZP9_HUMAN:140:389_5v3m_C_1
3 5v3j 120:389 140 389 P:E · DNA:A,B 46.4% / 63.6% 90 View · PDB TFS_tr_B4DZP9_B4DZP9_HUMAN:140:389_5v3j_E_1
1 5wjq 120:389 126 386 P:D · DNA:A,B 44.4% / 62.5% 92 View · PDB TFS_tr_B4DZP9_B4DZP9_HUMAN:126:386_5wjq_D_1

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
3-44PF01352KRAB boxNo overlap with loaded model regions
167-189PF00096Zinc finger, C2H2 typeoverlaps 126-389
227-245PF00096Zinc finger, C2H2 typeoverlaps 126-389
251-273PF00096Zinc finger, C2H2 typeoverlaps 126-389
279-301PF00096Zinc finger, C2H2 typeoverlaps 126-389
307-329PF00096Zinc finger, C2H2 typeoverlaps 126-389
335-357PF00096Zinc finger, C2H2 typeoverlaps 126-389
363-385PF00096Zinc finger, C2H2 typeoverlaps 126-389