ModCRE DB

Transcription factor

B4DZR3

cDNA FLJ59826, highly similar to Zinc finger protein ZFPM2

Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 882 aa

7 Generated PWM 7 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)0

No generated PWM in this category.

ModCRE7
MotifPredictionSourceDNA bindingSupportLogoActions
TFS_tr_B4DZR3_B4DZR3_HUMAN:29:117_1a1g_A_1 ModCRE Homology model ACAAAGTTTT Region 29-117 · 1 3D model Open · Scan
TFS_tr_B4DZR3_B4DZR3_HUMAN:29:117_1a1i_A_1 ModCRE Homology model CAGGCGCTTG Region 29-117 · 1 3D model Open · Scan
TFS_tr_B4DZR3_B4DZR3_HUMAN:29:117_1a1k_A_1 ModCRE Homology model CAACTATTTG Region 29-117 · 1 3D model Open · Scan
TFS_tr_B4DZR3_B4DZR3_HUMAN:65:125_8ffz_A_1 ModCRE Homology model AGGCGCAGGGAGATGG Region 65-125 · 1 3D model Open · Scan
TFS_tr_B4DZR3_B4DZR3_HUMAN:67:131_5t0u_A_1 ModCRE Homology model CCGTAAGCGCGTAAAG Region 67-131 · 1 3D model Open · Scan
TFS_tr_B4DZR3_B4DZR3_HUMAN:67:131_8sss_A_1 ModCRE Homology model CTGTTGGAGCTTAAAG Region 67-131 · 1 3D model Open · Scan
TFS_tr_B4DZR3_B4DZR3_HUMAN:68:116_5yj3_C_1 ModCRE Homology model AACCA Region 68-116 · 1 3D model Open · Scan

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 882 aa
29-131

Region 29-131 7 PWM

Residues
103 aa
Domains
PF00096 · Zinc finger, C2H2 type
3D models
7 active PDBs · 5 summary rows
Templates
1A1G, 1A1I, 1A1K, 5T0U, 5YJ3, 8FFZ, 8SSS
Sources
Predicted = Low
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
7 active PDB models 5 summary rows
Region 29-1317 models · 5 summary rows
Actions
Predicted = Low TFS_tr_B4DZR3_B4DZR3_HUMAN:29:117_1a1g_A_1 1a1g 29-117 View model · PDB
Predicted = Low TFS_tr_B4DZR3_B4DZR3_HUMAN:29:117_1a1i_A_1 1a1i 29-117 View model · PDB
Predicted = Low TFS_tr_B4DZR3_B4DZR3_HUMAN:29:117_1a1k_A_1 1a1k 29-117 View model · PDB
Predicted = Low TFS_tr_B4DZR3_B4DZR3_HUMAN:65:125_8ffz_A_1 8ffz 65-125 View model · PDB
Predicted = Low TFS_tr_B4DZR3_B4DZR3_HUMAN:67:131_5t0u_A_1 5t0u 67-131 View model · PDB
Predicted = Low TFS_tr_B4DZR3_B4DZR3_HUMAN:67:131_8sss_A_1 8sss 67-131 View model · PDB
Predicted = Low TFS_tr_B4DZR3_B4DZR3_HUMAN:68:116_5yj3_C_1 5yj3 68-116 View model · PDB

Model-summary evidence imported for this region.

RankTemplateDomainN-tailsC-tailsChainsIdentity / similarityCoverageModel file
1 5t0u 23:131 67 131 P:A · DNA:B,C 27.7% / 50.8% 37 View · PDB TFS_tr_B4DZR3_B4DZR3_HUMAN:67:131_5t0u_A_1
4 8sss 23:131 67 131 P:A · DNA:B,C 27.7% / 50.8% 31 View · PDB TFS_tr_B4DZR3_B4DZR3_HUMAN:67:131_8sss_A_1
5 8ffz 23:131 65 125 P:A · DNA:I,J 24.6% / 50.8% 19 View · PDB TFS_tr_B4DZR3_B4DZR3_HUMAN:65:125_8ffz_A_1
2 1a1k 23:131 29 117 P:A · DNA:B,C 22.5% / 39.3% 94 View · PDB TFS_tr_B4DZR3_B4DZR3_HUMAN:29:117_1a1k_A_1
3 1a1i 23:131 29 117 P:A · DNA:B,C 22.5% / 39.3% 94 View · PDB TFS_tr_B4DZR3_B4DZR3_HUMAN:29:117_1a1i_A_1

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
29-51PF00096Zinc finger, C2H2 typeoverlaps 29-131
281-304PF25445ZFPM2-like CCHC zinc fingerNo overlap with loaded model regions
847-882PF25445ZFPM2-like CCHC zinc fingerNo overlap with loaded model regions